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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0048509 |
| Transcript ID | Lj0g3v0048509.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 540 | 527 | 3.80E-272 | – | |
| PANTHER | 14 | 540 | 527 | 3.80E-272 | – | |
| Pfam | 48 | 97 | 50 | 2.80E-04 | ||
| ProSiteProfiles | 52 | 86 | 35 | 7.673 | ||
| ProSiteProfiles | 87 | 121 | 35 | 9.536 | ||
| TIGRFAM | 89 | 123 | 35 | 6.50E-05 | ||
| Pfam | 121 | 170 | 50 | 9.50E-13 | ||
| ProSiteProfiles | 122 | 156 | 35 | 11.038 | ||
| TIGRFAM | 124 | 157 | 34 | 8.70E-06 | ||
| ProSiteProfiles | 157 | 191 | 35 | 13.187 | ||
| TIGRFAM | 159 | 193 | 35 | 4.00E-09 | ||
| Pfam | 191 | 239 | 49 | 2.30E-18 | ||
| SUPERFAMILY | 192 | 258 | 67 | 6.07E-06 | ||
| ProSiteProfiles | 192 | 226 | 35 | 11.992 | ||
| TIGRFAM | 194 | 228 | 35 | 2.80E-10 | ||
| ProSiteProfiles | 227 | 261 | 35 | 11.455 | ||
| TIGRFAM | 229 | 263 | 35 | 2.30E-06 | ||
| Gene3D | 242 | 535 | 294 | 2.60E-07 | ||
| Pfam | 257 | 289 | 33 | 6.10E-10 | ||
| ProSiteProfiles | 262 | 296 | 35 | 12.956 | ||
| TIGRFAM | 264 | 298 | 35 | 6.50E-09 | ||
| SUPERFAMILY | 295 | 495 | 201 | 6.07E-06 | ||
| Pfam | 297 | 345 | 49 | 2.80E-17 | ||
| ProSiteProfiles | 297 | 331 | 35 | 12.627 | ||
| TIGRFAM | 299 | 333 | 35 | 9.90E-09 | ||
| ProSiteProfiles | 332 | 366 | 35 | 11.838 | ||
| TIGRFAM | 335 | 367 | 33 | 2.30E-07 | ||
| Pfam | 366 | 415 | 50 | 4.20E-16 | ||
| ProSiteProfiles | 367 | 401 | 35 | 12.189 | ||
| TIGRFAM | 369 | 398 | 30 | 2.10E-08 | ||
| ProSiteProfiles | 402 | 436 | 35 | 11.488 | ||
| TIGRFAM | 404 | 437 | 34 | 1.30E-06 | ||
| Pfam | 436 | 485 | 50 | 1.60E-16 | ||
| ProSiteProfiles | 437 | 471 | 35 | 12.288 | ||
| TIGRFAM | 439 | 472 | 34 | 2.70E-06 | ||
| ProSiteProfiles | 472 | 506 | 35 | 12.715 | ||
| TIGRFAM | 475 | 506 | 32 | 8.90E-11 | ||
| Pfam | 502 | 534 | 33 | 7.20E-07 | ||
| ProSiteProfiles | 507 | 540 | 34 | 9.964 | ||
| TIGRFAM | 509 | 539 | 31 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0048509.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0048509.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.