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Field | Value |
---|---|
Gene ID | Lj0g3v0048699 |
Transcript ID | Lj0g3v0048699.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi|225432860|ref|XP_002283908.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 32 | 32 | – | – | |
PANTHER | 1 | 463 | 463 | 6.30E-266 | ||
SUPERFAMILY | 106 | 121 | 16 | 9.22E-23 | ||
SUPERFAMILY | 192 | 428 | 237 | 9.22E-23 | ||
Gene3D | 276 | 460 | 185 | 1.80E-12 | ||
CDD | 339 | 410 | 72 | 4.59E-04 | – | |
ProSiteProfiles | 379 | 419 | 41 | 8.627 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
Cellular component | SWI/SNF complex | A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof. | ||
Cellular component | Brahma complex | A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the Drosophila brm (brahma) or mammalian SMARCA2/BAF190B/BRM gene, or an ortholog thereof. |
Expression pattern of Lj0g3v0048699.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0048699.1, powered by CORGI.
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