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Lj0g3v0050699.1

Overview

Field Value
Gene ID Lj0g3v0050699
Transcript ID Lj0g3v0050699.1
Lotus japonicus genome version MG20 v3.0
Description maturase K [Lotus japonicus] gi|13518419|ref|NP_084779.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 88 88 – –
Hamap
MF_01390
1 508 508 29.688
IPR002866
Pfam
PF01824
1 332 332 1.70E-162
IPR024942
PANTHER
PTHR34811
2 507 506 1.10E-226 –
Phobius
TRANSMEMBRANE
89 108 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
109 206 98 – –
Phobius
TRANSMEMBRANE
207 226 20 – –
Phobius
CYTOPLASMIC_DOMAIN
227 508 282 – –
Pfam
PF01348
360 476 117 1.10E-33
IPR024937

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0050699.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0050699.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.