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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007121
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.403s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0053899.1
n.a. RNA polymerase beta subunit [Lotus japonicus] gi|13518436|ref|NP_084796.1| chr0 17332782 17335212 -
2 domain predictions
3 GO terms
Lj1g3v1815480.1
n.a. DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|357466021|ref|XP_003603295.1| chr1 22042696 22046193 -
2 domain predictions
3 GO terms
Lj3g3v1906470.1
n.a. PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine max] gi|356548837|ref|XP_003542805.1| chr3 24407512 24425335 +
2 domain predictions
3 GO terms
Ljchlorog3v0000380.1
n.a. RNA polymerase beta subunit [Lotus japonicus] gi|13518436|ref|NP_084796.1| chloro 35779 37596 +
2 domain predictions
3 GO terms
LotjaGi1g1v0377700.1
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT3G23780.1 nuclear RNA polymerase D2A; Swiss-Prot: sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2; TrEMBL-Plants: tr|A0A0B2RBE2|A0A0B2RBE2_GLYSO DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi1g1v0377700 LjG1.1_chr1 85736272 85742300 -
2 domain predictions
3 GO terms
LotjaGi3g1v0300900_LC.2
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0300900_LC LjG1.1_chr3 62700110 62703938 +
2 domain predictions
3 GO terms
LotjaGi3g1v0315900.1
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT1G29940.1 nuclear RNA polymerase A2; Swiss-Prot: sp|F4I366|NRPA2_ARATH DNA-directed RNA polymerase I subunit 2; TrEMBL-Plants: tr|I1M0N3|I1M0N3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0315900 LjG1.1_chr3 66926036 66952683 +
2 domain predictions
3 GO terms
LotjaGi3g1v0315900.2
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT1G29940.1 nuclear RNA polymerase A2; Swiss-Prot: sp|F4I366|NRPA2_ARATH DNA-directed RNA polymerase I subunit 2; TrEMBL-Plants: tr|A0A0R0GQW5|A0A0R0GQW5_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0315900 LjG1.1_chr3 66926144 66952232 +
2 domain predictions
3 GO terms
LotjaGi5g1v0334100.1
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0334100 LjG1.1_chr5 65089450 65124594 +
2 domain predictions
3 GO terms
LotjaGi6g1v0332200.1
n.a. DNA-directed RNA polymerase subunit beta; TAIR: AT4G21710.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2; TrEMBL-Plants: tr|V7BQ99|V7BQ99_PHAVU DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi6g1v0332200 LjG1.1_chr6 64717869 64726425 +
2 domain predictions
3 GO terms