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Lj0g3v0056329.1

Overview

Field Value
Gene ID Lj0g3v0056329
Transcript ID Lj0g3v0056329.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein OSB2, chloroplastic-like [Cicer arietinum] gi|502115197|ref|XP_004495147.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10302:SF0
1 218 218 1.70E-83 –
PANTHER
PTHR10302
1 218 218 1.70E-83
IPR011344
ProSiteProfiles
PS50935
19 116 98 21.298
IPR000424
Gene3D
G3DSA:2.40.50.140
20 144 125 3.20E-21 –
TIGRFAM
TIGR00621
20 135 116 3.50E-17
IPR011344
Pfam
PF00436
21 114 94 1.50E-16
IPR000424
SUPERFAMILY
SSF50249
21 203 183 5.48E-25
IPR012340
CDD
cd04496
23 115 93 7.17E-19 –
Gene3D
G3DSA:2.80.10.50
145 206 62 7.20E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0056329.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0056329.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.