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Lj0g3v0062319.1

Overview

Field Value
Gene ID Lj0g3v0062319
Transcript ID Lj0g3v0062319.1
Lotus japonicus genome version MG20 v3.0
Description transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 142 142 – –
PRINTS
PR00929
2 12 11 5.90E-10
IPR017956
SMART
SM00384
2 14 13 0.97
IPR017956
SMART
SM00384
44 56 13 150
IPR017956
PRINTS
PR00929
62 73 12 5.90E-10
IPR017956
SMART
SM00384
64 76 13 0.97
IPR017956
SMART
SM00384
106 118 13 150
IPR017956
PRINTS
PR00929
124 134 11 5.90E-10
IPR017956
SMART
SM00384
126 138 13 6.2
IPR017956
MobiDBLite
mobidb-lite
165 212 48 – –
SMART
SM00384
182 193 12 130
IPR017956
SMART
SM00384
201 213 13 44
IPR017956

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0062319.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0062319.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.