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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PR00929
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We have found 57 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.036s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062309.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 20888206 20904997 -
2 domain predictions
1 GO term
Lj0g3v0062319.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 20900418 20901766 -
2 domain predictions
1 GO term
Lj0g3v0073699.1
n.a. family 2 glycosyl transferase [Myxococcus stipitatus DSM 14675] gi|442322689|ref|YP_007362710.1| chr0 27682602 27683896 -
2 domain predictions
1 GO term
Lj0g3v0093109.1
n.a. origin recognition complex subunit Orc4 [Schizosaccharomyces pombe 972h]-] gi|19112617|ref|NP_595825.1| chr0 38883609 38885196 -
2 domain predictions
1 GO term
Lj0g3v0093109.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1| chr0 38883609 38887246 -
2 domain predictions
1 GO term
Lj0g3v0217419.1
n.a. HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1| chr0 110690915 110692219 -
2 domain predictions
1 GO term
Lj0g3v0236199.1
n.a. PREDICTED: zinc finger protein 436-like [Cavia porcellus] gi|348570796|ref|XP_003471183.1| chr0 122410972 122411653 -
2 domain predictions
1 GO term
Lj0g3v0259499.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 134881318 134890456 +
2 domain predictions
1 GO term
Lj0g3v0259499.2
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|18394746|ref|NP_564086.1| chr0 134881318 134890456 +
2 domain predictions
1 GO term
Lj0g3v0310589.1
n.a. Os07g0180800 [Oryza sativa Japonica Group] gi|297725433|ref|NP_001175080.1| chr0 162241895 162243618 +
2 domain predictions
1 GO term
Lj0g3v0361069.1
n.a. PREDICTED: HMG-Y-related protein A-like [Glycine max] gi|356539824|ref|XP_003538393.1| chr0 190201800 190202484 +
2 domain predictions
1 GO term
Lj1g3v2634040.1
n.a. KLTH0F07568p [Lachancea thermotolerans] gi|255716500|ref|XP_002554531.1| chr1 30850485 30851315 +
2 domain predictions
1 GO term
Lj1g3v3404290.1
n.a. AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1| chr1 39211773 39215090 -
2 domain predictions
1 GO term
Lj2g3v0677970.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr2 10862247 10864542 -
2 domain predictions
1 GO term
Lj2g3v2560000.1
n.a. high mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1| chr2 35272421 35273630 -
2 domain predictions
1 GO term
Lj3g3v0718510.1
n.a. PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1| chr3 7886811 7890695 -
2 domain predictions
1 GO term
Lj3g3v1128980.1
n.a. AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1| chr3 15196922 15200189 +
2 domain predictions
1 GO term
Lj4g3v1399600.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Maylandia zebra] gi|499027288|ref|XP_004564380.1| chr4 21990064 21990609 +
2 domain predictions
1 GO term
Lj4g3v2644190.1
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
1 GO term
Lj4g3v2644190.2
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
1 GO term
Lj4g3v3114650.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr4 42047142 42049604 +
2 domain predictions
1 GO term
Lj6g3v0423840.1
n.a. HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1| chr6 3969164 3970540 -
2 domain predictions
1 GO term
Lj6g3v0755720.1
n.a. PREDICTED: high mobility group protein HMG-I/HMG-Y isoform X2 [Ochotona princeps] gi|504157635|ref|XP_004590339.1| chr6 7155859 7156830 -
2 domain predictions
1 GO term
LotjaGi1g1v0007100_LC.1
n.a. Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P79987|HIRA_CHICK Protein HIRA; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi1g1v0007100_LC LjG1.1_chr1 1012673 1014044 -
2 domain predictions
1 GO term
LotjaGi1g1v0092300.1
n.a. HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300 LjG1.1_chr1 13568955 13570373 -
2 domain predictions
1 GO term
LotjaGi1g1v0161700_LC.1
n.a. Amyloid beta A4 precursor protein-binding family B member 1-interacting protein; TAIR: AT5G39820.1 NAC domain containing protein 94; Swiss-Prot: sp|Q6ZFZ4|DEK1_ORYSJ Calpain-type cysteine protease ADL1; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0161700_LC LjG1.1_chr1 30418279 30419572 -
2 domain predictions
1 GO term
LotjaGi1g1v0311000_LC.2
n.a. 3-methyl-2-oxobutanoate hydroxymethyltransferase; TAIR: AT2G16950.1 transportin 1; Swiss-Prot: sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi1g1v0311000_LC LjG1.1_chr1 75443351 75445084 +
2 domain predictions
1 GO term
LotjaGi1g1v0569400.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400 LjG1.1_chr1 110231950 110235440 -
2 domain predictions
1 GO term
LotjaGi2g1v0138100_LC.1
n.a. High mobility group protein HMGI-C; TAIR: AT5G46200.1 carboxyl-terminal proteinase-like protein (DUF239); Swiss-Prot: sp|Q95QK3|JMJ31_CAEEL Lysine-specific demethylase jmjd-3.1; TrEMBL-Plants: tr|F6HE43|F6HE43_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0138100_LC LjG1.1_chr2 50404611 50407429 +
2 domain predictions
1 GO term
LotjaGi2g1v0198500.1
n.a. Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500 LjG1.1_chr2 63348952 63355051 -
2 domain predictions
1 GO term
LotjaGi3g1v0088400_LC.1
n.a. Imidazole glycerol phosphate synthase subunit HisF; TAIR: AT1G62820.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|A0A072TE97|A0A072TE97_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0088400_LC LjG1.1_chr3 9972018 9976463 +
2 domain predictions
1 GO term
LotjaGi3g1v0105100_LC.1
n.a. RNA-binding protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A087SFR6|A0A087SFR6_AUXPR Eukaryotic translation initiation factor 3 subunit G; Found in the gene: LotjaGi3g1v0105100_LC LjG1.1_chr3 13054540 13056414 +
2 domain predictions
1 GO term
LotjaGi3g1v0123600_LC.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123600_LC LjG1.1_chr3 15130671 15133335 +
2 domain predictions
1 GO term
LotjaGi3g1v0481300.1
n.a. AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SCI8|A0A0S3SCI8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481300 LjG1.1_chr3 89890802 89894631 -
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.1
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.2
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.3
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.4
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.5
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.6
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156706 10161025 +
2 domain predictions
1 GO term
LotjaGi4g1v0078100_LC.7
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156779 10161339 +
2 domain predictions
1 GO term
LotjaGi4g1v0147700_LC.1
n.a. HMG-Y-related A; TAIR: AT5G27890.1 hypothetical protein; Swiss-Prot: sp|A6ZMG6|MYO5_YEAS7 Myosin-5; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0147700_LC LjG1.1_chr4 24037157 24039300 -
2 domain predictions
1 GO term
LotjaGi4g1v0165500_LC.1
n.a. Auxin response factor; TAIR: AT1G66530.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|P44969|IGA0_HAEIN Immunoglobulin A1 protease autotransporter; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0165500_LC LjG1.1_chr4 31360296 31364688 -
2 domain predictions
1 GO term
LotjaGi4g1v0221300_LC.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1; TrEMBL-Plants: tr|G7IEB7|G7IEB7_MEDTR PHD finger protein, putative; Found in the gene: LotjaGi4g1v0221300_LC LjG1.1_chr4 52473573 52477015 +
2 domain predictions
1 GO term
LotjaGi4g1v0325400_LC.1
n.a. Transducin/WD40 repeat protein; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|C0JP24|C0JP24_LOTJA Putative basic helix-loop-helix protein BHLH6; Found in the gene: LotjaGi4g1v0325400_LC LjG1.1_chr4 70378320 70379663 -
2 domain predictions
1 GO term
LotjaGi4g1v0463300.1
n.a. Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300 LjG1.1_chr4 83331441 83334236 +
2 domain predictions
1 GO term
LotjaGi5g1v0010800_LC.1
n.a. General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC LjG1.1_chr5 2524662 2532335 -
2 domain predictions
1 GO term
LotjaGi5g1v0010800_LC.12
n.a. General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|K7LHU1|K7LHU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010800_LC LjG1.1_chr5 2524765 2531454 -
2 domain predictions
1 GO term
LotjaGi5g1v0010800_LC.13
n.a. General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC LjG1.1_chr5 2524765 2534278 -
2 domain predictions
1 GO term
LotjaGi5g1v0010800_LC.3
n.a. General transcription factor 3C polypeptide 2; TAIR: AT1G19485.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2; TrEMBL-Plants: tr|A0A072VKV4|A0A072VKV4_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0010800_LC LjG1.1_chr5 2524662 2534027 -
2 domain predictions
1 GO term