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Lj0g3v0065559.1

Overview

Field Value
Gene ID Lj0g3v0065559
Transcript ID Lj0g3v0065559.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Glycine max] gi|356568971|ref|XP_003552681.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 526 526 – –
PANTHER
PTHR23152:SF8
2 17 16 0 –
PANTHER
PTHR23152
2 17 16 0
IPR011603
PANTHER
PTHR23152:SF8
46 527 482 0 –
PANTHER
PTHR23152
46 527 482 0
IPR011603
Pfam
PF16078
74 113 40 6.30E-17
IPR032106
SUPERFAMILY
SSF52518
159 527 369 1.25E-77
IPR029061
Gene3D
G3DSA:3.40.50.970
207 526 320 1.40E-70
IPR029061
Pfam
PF00676
258 526 269 1.60E-55
IPR001017
CDD
cd02016
259 525 267 0 –
Phobius
TRANSMEMBRANE
527 548 22 – –
Phobius
CYTOPLASMIC_DOMAIN
549 555 7 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004591
Molecular function Oxoglutarate dehydrogenase (succinyl-transferring) activity Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0016624
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0065559.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0065559.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.