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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0066839 |
| Transcript ID | Lj0g3v0066839.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356504274|ref|XP_003520922.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | – | – | |
| PANTHER | 7 | 350 | 344 | 2.80E-232 | – | |
| PANTHER | 7 | 350 | 344 | 2.80E-232 | ||
| SUPERFAMILY | 52 | 79 | 28 | 3.53E-41 | – | |
| TMHMM | 53 | 75 | 23 | – | – | |
| Phobius | 53 | 74 | 22 | – | – | |
| Gene3D | 55 | 77 | 23 | 3.60E-55 | ||
| Phobius | 75 | 134 | 60 | – | – | |
| Gene3D | 109 | 262 | 154 | 3.60E-55 | ||
| SUPERFAMILY | 111 | 266 | 156 | 3.53E-41 | – | |
| Pfam | 123 | 265 | 143 | 7.40E-38 | ||
| Phobius | 135 | 156 | 22 | – | – | |
| TMHMM | 135 | 157 | 23 | – | – | |
| Phobius | 157 | 162 | 6 | – | – | |
| Phobius | 163 | 186 | 24 | – | – | |
| TMHMM | 164 | 186 | 23 | – | – | |
| Phobius | 187 | 191 | 5 | – | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 192 | 210 | 19 | – | – | |
| Phobius | 211 | 221 | 11 | – | – | |
| TMHMM | 220 | 242 | 23 | – | – | |
| Phobius | 222 | 239 | 18 | – | – | |
| Phobius | 240 | 244 | 5 | – | – | |
| Phobius | 245 | 263 | 19 | – | – | |
| TMHMM | 246 | 263 | 18 | – | – | |
| Phobius | 264 | 292 | 29 | – | – | |
| Phobius | 293 | 315 | 23 | – | – | |
| TMHMM | 293 | 315 | 23 | – | – | |
| Phobius | 316 | 388 | 73 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0066839.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0066839.1, powered by CORGI.
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