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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0073479 |
| Transcript ID | Lj0g3v0073479.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: inactive rhomboid protein 1-like [Cicer arietinum] gi|502175388|ref|XP_004515720.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | – | – | |
| PANTHER | 1 | 316 | 316 | 9.90E-228 | – | |
| PANTHER | 1 | 316 | 316 | 9.90E-228 | ||
| SUPERFAMILY | 26 | 52 | 27 | 4.58E-43 | – | |
| TMHMM | 26 | 48 | 23 | – | – | |
| Gene3D | 27 | 50 | 24 | 5.70E-59 | ||
| Phobius | 29 | 48 | 20 | – | – | |
| Phobius | 49 | 111 | 63 | – | – | |
| Gene3D | 86 | 240 | 155 | 5.70E-59 | ||
| SUPERFAMILY | 88 | 243 | 156 | 4.58E-43 | – | |
| Pfam | 100 | 242 | 143 | 1.20E-41 | ||
| Phobius | 112 | 133 | 22 | – | – | |
| TMHMM | 112 | 134 | 23 | – | – | |
| Phobius | 134 | 144 | 11 | – | – | |
| TMHMM | 141 | 163 | 23 | – | – | |
| Phobius | 145 | 163 | 19 | – | – | |
| Phobius | 164 | 168 | 5 | – | – | |
| TMHMM | 168 | 190 | 23 | – | – | |
| Phobius | 169 | 190 | 22 | – | – | |
| Phobius | 191 | 196 | 6 | – | – | |
| Phobius | 197 | 216 | 20 | – | – | |
| TMHMM | 197 | 219 | 23 | – | – | |
| Phobius | 217 | 221 | 5 | – | – | |
| Phobius | 222 | 239 | 18 | – | – | |
| TMHMM | 223 | 240 | 18 | – | – | |
| Phobius | 240 | 266 | 27 | – | – | |
| TMHMM | 267 | 289 | 23 | – | – | |
| Phobius | 267 | 289 | 23 | – | – | |
| Phobius | 290 | 317 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0073479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0073479.1, powered by CORGI.
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