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Lj0g3v0094589.1

Overview

Field Value
Gene ID Lj0g3v0094589
Transcript ID Lj0g3v0094589.1
Lotus japonicus genome version MG20 v3.0
Description Hypothetical protein CBG05841 [Caenorhabditis briggsae] gi|268536014|ref|XP_002633142.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 41 41 – –
Pfam
PF00125
1 72 72 1.90E-18
IPR007125
PANTHER
PTHR11426
1 72 72 4.00E-66
IPR000164
Gene3D
G3DSA:1.10.20.10
2 73 72 4.40E-39
IPR009072
SUPERFAMILY
SSF47113
2 74 73 2.65E-24
IPR009072
PRINTS
PR00622
3 17 15 2.10E-43
IPR000164
ProSitePatterns
PS00322
15 21 7 –
IPR000164
PRINTS
PR00622
17 31 15 2.10E-43
IPR000164
PRINTS
PR00622
34 55 22 2.10E-43
IPR000164
SMART
SM00428
34 108 75 3.70E-04
IPR000164
PRINTS
PR00622
58 75 18 2.10E-43
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0094589.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0094589.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.