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Lj0g3v0114629.1

Overview

Field Value
Gene ID Lj0g3v0114629
Transcript ID Lj0g3v0114629.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: clustered mitochondria protein-like isoform X1 [Cicer arietinum] gi|502170858|ref|XP_004514933.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_03013
1 1254 1254 33.76
IPR027523
PANTHER
PTHR12601:SF6
1 367 367 0 –
PANTHER
PTHR12601
1 367 367 0 –
Pfam
PF15044
1 75 75 2.50E-16
IPR028275
SUPERFAMILY
SSF103107
126 238 113 5.10E-23
IPR023231
Pfam
PF05303
160 227 68 1.10E-05
IPR007967
Pfam
PF13236
281 564 284 2.60E-82
IPR025697
MobiDBLite
mobidb-lite
364 424 61 – –
PANTHER
PTHR12601
428 1302 875 0 –
PANTHER
PTHR12601:SF6
428 1302 875 0 –
MobiDBLite
mobidb-lite
591 615 25 – –
Pfam
PF12807
695 879 185 7.50E-51
IPR033646
CDD
cd15466
697 880 184 1.12E-47
IPR033646
MobiDBLite
mobidb-lite
781 818 38 – –
Gene3D
G3DSA:1.25.40.10
907 1116 210 4.50E-18
IPR011990
ProSiteProfiles
PS50005
908 941 34 6.048
IPR019734
SMART
SM00028
908 941 34 180
IPR019734
SUPERFAMILY
SSF48452
910 1019 110 2.75E-12
IPR011990
Pfam
PF13424
956 1019 64 8.20E-09 –
SUPERFAMILY
SSF48452
987 1105 119 7.59E-16
IPR011990
SMART
SM00028
992 1025 34 49
IPR019734
ProSiteProfiles
PS50293
992 1067 76 11.181
IPR013026
ProSiteProfiles
PS50005
992 1025 34 6.018
IPR019734
Pfam
PF13424
1032 1105 74 2.50E-12 –
ProSiteProfiles
PS50005
1034 1067 34 9.086
IPR019734
SMART
SM00028
1034 1067 34 0.097
IPR019734
MobiDBLite
mobidb-lite
1257 1312 56 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0048312
Biological process Intracellular distribution of mitochondria Any process that establishes the spatial arrangement of mitochondria within the cell.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0114629.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0114629.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.