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Lj0g3v0116299.3

Overview

Field Value
Gene ID Lj0g3v0116299
Transcript ID Lj0g3v0116299.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] gi|356499439|ref|XP_003518548.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10848:SF3
20 239 220 1.40E-153 –
Gene3D
G3DSA:3.40.1360.10
20 235 216 4.70E-70 –
PANTHER
PTHR10848
20 239 220 1.40E-153
IPR002815
SUPERFAMILY
SSF56726
20 234 215 2.88E-66
IPR002815
CDD
cd00223
61 217 157 5.64E-67 –
PRINTS
PR01550
63 80 18 1.50E-23
IPR002815
PRINTS
PR01551
77 92 16 3.70E-09
IPR013048
PRINTS
PR01550
87 108 22 1.50E-23
IPR002815
PRINTS
PR01550
119 135 17 1.50E-23
IPR002815
PRINTS
PR01551
124 143 20 3.70E-09
IPR013048
PRINTS
PR01551
159 183 25 3.70E-09
IPR013048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005694
Cellular component Chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Subterm of
GO:0016889
Molecular function Endodeoxyribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0116299.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0116299.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.