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PR01550

Source: PRINTS

Description

DNA topoisomerase VI subunit A family signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005694
Cellular component Chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Subterm of
GO:0016889
Molecular function Endodeoxyribonuclease activity, producing 3'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters.
Subterm of

Associated Lotus transcripts 23

Transcript Name Description Predicted domains Domain count
Lj0g3v0116299.1
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
Domains
9
Lj0g3v0116299.3
– PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] gi|356499439|ref|XP_003518548.1|
Domains
9
Lj0g3v0253289.1
– AT5G02820-like protein, partial [Capsella rubella] gi|345292731|gb|AEN82857.1|
Domains
7
Lj0g3v0292879.2
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
Domains
9
Lj0g3v0329199.1
– PREDICTED: DNA topoisomerase 6 subunit A-like isoform 1 [Fragaria vesca subsp]. vesca] gi|470104330|ref|XP_004288560.1|
Domains
7
Lj2g3v2051220.1
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
Domains
11
Lj2g3v2051220.2
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
Domains
10
Lj5g3v0615700.1
–
Domains
9
Lj5g3v0615710.1
– PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi|502121820|ref|XP_004497452.1|
Domains
15
Lj6g3v2172040.1
– RHL2 [Zea mays] gi|195647934|gb|ACG43435.1|
Domains
8
LotjaGi1g1v0016700.1
– DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700
Domains
11
LotjaGi1g1v0016700.2
– DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700
Domains
11
LotjaGi2g1v0088900_LC.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
Domains
9
LotjaGi2g1v0088900_LC.4
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
Domains
9
LotjaGi2g1v0088900_LC.5
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
Domains
7
LotjaGi2g1v0436400.1
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
Domains
13
LotjaGi2g1v0436400.2
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|G7KC02|G7KC02_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi2g1v0436400
Domains
13
LotjaGi2g1v0436400.3
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.2 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
Domains
11
LotjaGi2g1v0436400.4
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
Domains
13
LotjaGi2g1v0436400.5
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
Domains
9
LotjaGi2g1v0436400.6
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
Domains
13
LotjaGi5g1v0072800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A068F783|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800
Domains
17
LotjaGi6g1v0346800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|I1H6P7|I1H6P7_BRADI DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi6g1v0346800
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00223 CDD 1 4.35