Domain Predictions — View

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cd00223

Source: CDD

Description

TOPRIM_TopoIIB_SPO

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0116299.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] gi\|356499439\|ref\|XP_003518548.1\|	Domains G3DSA:3.40.1360.10 IPR002815 IPR013048 PR01550 PR01551 PTHR10848 PTHR10848:SF3 SSF56726 cd00223	9
Lj0g3v0253289.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AT5G02820-like protein, partial [Capsella rubella] gi\|345292731\|gb\|AEN82857.1\|	Domains G3DSA:3.40.1360.10 IPR002815 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	7
Lj0g3v0329199.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 6 subunit A-like isoform 1 [Fragaria vesca subsp]. vesca] gi\|470104330\|ref\|XP_004288560.1\|	Domains G3DSA:3.40.1360.10 IPR002815 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	7
Lj2g3v2051220.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi\|502159864\|ref\|XP_004511556.1\|	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR011991 IPR013049 PF04406 PR01550 PTHR10848 PTHR10848:SF1 SSF56726 cd00223	11
Lj5g3v0615700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains G3DSA:3.40.1360.10 IPR002815 IPR004085 PR01550 PR01552 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	9
Lj5g3v0615710.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi\|502121820\|ref\|XP_004497452.1\|	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR004085 IPR011991 IPR013049 MF_00132 PF04406 PR01550 PR01552 PTHR10848 PTHR10848:SF0 SSF56726 cd00223 mobidb-lite	15
Lj6g3v2172040.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RHL2 [Zea mays] gi\|195647934\|gb\|ACG43435.1\|	Domains G3DSA:3.40.1360.10 IPR002815 IPR013048 PR01550 PR01551 PTHR10848 SSF56726 cd00223	8
LotjaGi1g1v0016700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp\|Q9M4A2\|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr\|G7K4J7\|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700	Domains G3DSA:3.40.1360.10 IPR002815 IPR013048 IPR034136 IPR036078 PR01550 PR01551 PTHR10848 PTHR10848:SF3 SSF56726 cd00223	11
LotjaGi1g1v0016700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp\|Q9M4A2\|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr\|G7K4J7\|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700	Domains G3DSA:3.40.1360.10 IPR002815 IPR013048 IPR034136 IPR036078 PR01550 PR01551 PTHR10848 PTHR10848:SF3 SSF56726 cd00223	11
LotjaGi2g1v0436400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp\|Q9M4A1\|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr\|I1LGD2\|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR013049 IPR034136 IPR036078 IPR036388 PF04406 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	13
LotjaGi2g1v0436400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp\|Q9M4A1\|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr\|G7KC02\|G7KC02_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi2g1v0436400	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR013049 IPR034136 IPR036078 IPR036388 PF04406 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	13
LotjaGi2g1v0436400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp\|Q9M4A1\|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr\|I1LGD2\|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR013049 IPR034136 IPR036078 IPR036388 PF04406 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	13
LotjaGi2g1v0436400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp\|Q9M4A1\|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr\|K7LMM4\|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400	Domains G3DSA:3.40.1360.10 IPR002815 IPR034136 IPR036078 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	9
LotjaGi2g1v0436400.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp\|Q9M4A1\|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr\|K7LMM4\|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR013049 IPR034136 IPR036078 IPR036388 PF04406 PR01550 PTHR10848 PTHR10848:SF0 SSF56726 cd00223	13
LotjaGi5g1v0072800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp\|Q9LZ03\|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr\|A0A068F783\|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800	Domains G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR004085 IPR013049 IPR034136 IPR036078 IPR036388 MF_00132 PF04406 PR01550 PR01552 PTHR10848 PTHR10848:SF4 SSF56726 cd00223 mobidb-lite	17
LotjaGi6g1v0346800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp\|A2XFC1\|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr\|I1H6P7\|I1H6P7_BRADI DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi6g1v0346800	Domains Coil G3DSA:1.10.10.10 G3DSA:3.40.1360.10 IPR002815 IPR004085 IPR013049 IPR034136 IPR036078 IPR036388 PF04406 PR01550 PR01552 PTHR10848 PTHR10848:SF4 SSF56726 cd00223	16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00223	CDD	1	6.25