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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002815
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.562s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116299.1
n.a. Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1| chr0 51142747 51147018 +
4 domain predictions
3 GO terms
Lj0g3v0116299.3
n.a. PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] gi|356499439|ref|XP_003518548.1| chr0 51142747 51147018 +
4 domain predictions
3 GO terms
Lj0g3v0253289.1
n.a. AT5G02820-like protein, partial [Capsella rubella] gi|345292731|gb|AEN82857.1| chr0 131529959 131530531 -
4 domain predictions
3 GO terms
Lj0g3v0292879.1
n.a. PREDICTED: meiotic recombination protein SPO11-1-like [Cicer arietinum] gi|502100203|ref|XP_004491659.1| chr0 152010336 152013476 +
3 domain predictions
3 GO terms
Lj0g3v0292879.2
n.a. Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1| chr0 152010336 152014688 +
4 domain predictions
3 GO terms
Lj0g3v0329199.1
n.a. PREDICTED: DNA topoisomerase 6 subunit A-like isoform 1 [Fragaria vesca subsp]. vesca] gi|470104330|ref|XP_004288560.1| chr0 172128470 172129732 -
4 domain predictions
3 GO terms
Lj0g3v0352439.3
n.a. Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1| chr0 185368939 185370677 -
3 domain predictions
3 GO terms
Lj2g3v2051220.1
n.a. PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1| chr2 31090054 31092660 -
4 domain predictions
3 GO terms
Lj2g3v2051220.2
n.a. PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1| chr2 31091258 31092660 -
4 domain predictions
3 GO terms
Lj5g3v0615700.1
n.a. n.a. chr5 7887024 7897292 -
4 domain predictions
3 GO terms
Lj5g3v0615710.1
n.a. PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi|502121820|ref|XP_004497452.1| chr5 7895312 7896984 +
4 domain predictions
3 GO terms
Lj6g3v2172040.1
n.a. RHL2 [Zea mays] gi|195647934|gb|ACG43435.1| chr6 25137554 25138484 -
4 domain predictions
3 GO terms
LotjaGi1g1v0016700.1
n.a. DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700 LjG1.1_chr1 2122723 2126951 +
3 domain predictions
3 GO terms
LotjaGi1g1v0016700.2
n.a. DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700 LjG1.1_chr1 2122723 2126951 +
3 domain predictions
3 GO terms
LotjaGi2g1v0088900_LC.1
n.a. DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC LjG1.1_chr2 25892656 25902471 -
3 domain predictions
3 GO terms
LotjaGi2g1v0088900_LC.4
n.a. DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC LjG1.1_chr2 25892656 25902471 -
3 domain predictions
3 GO terms
LotjaGi2g1v0088900_LC.5
n.a. DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC LjG1.1_chr2 25892737 25900180 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.1
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275489 93278388 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.2
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|G7KC02|G7KC02_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275489 93278388 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.3
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.2 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275685 93278395 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.4
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275685 93278395 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.5
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275776 93278348 -
3 domain predictions
3 GO terms
LotjaGi2g1v0436400.6
n.a. DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 LjG1.1_chr2 93275776 93278348 -
3 domain predictions
3 GO terms
LotjaGi5g1v0072800.1
n.a. DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A068F783|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800 LjG1.1_chr5 12057620 12059442 +
3 domain predictions
3 GO terms
LotjaGi6g1v0346800.1
n.a. DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|I1H6P7|I1H6P7_BRADI DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi6g1v0346800 LjG1.1_chr6 65920949 65922689 -
3 domain predictions
3 GO terms