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Lj0g3v0169339.1

Overview

Field Value
Gene ID Lj0g3v0169339
Transcript ID Lj0g3v0169339.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: malate dehydrogenase, chloroplastic-like [Glycine max] gi|356512147|ref|XP_003524782.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11540:SF14
66 411 346 4.10E-260 –
PANTHER
PTHR11540
66 411 346 4.10E-260
IPR001557
SUPERFAMILY
SSF51735
88 237 150 1.12E-40
IPR016040
CDD
cd01337
93 404 312 0 –
Pfam
PF00056
93 236 144 4.20E-47
IPR001236
Gene3D
G3DSA:3.40.50.720
94 237 144 7.60E-61
IPR016040
TIGRFAM
TIGR01772
94 405 312 3.50E-128
IPR010097
SUPERFAMILY
SSF56327
237 404 168 5.10E-41
IPR015955
ProSitePatterns
PS00068
237 249 13 –
IPR001252
Gene3D
G3DSA:3.90.110.10
238 405 168 1.30E-64
IPR015955
Pfam
PF02866
238 403 166 5.10E-46
IPR022383

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0006099
Biological process Tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
Subterm of
Part of
GO:0006108
Biological process Malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016615
Molecular function Malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030060
Molecular function L-malate dehydrogenase activity Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj0g3v0169339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0169339.1, powered by CORGI.

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