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Lj0g3v0180319.1

Overview

Field Value
Gene ID Lj0g3v0180319
Transcript ID Lj0g3v0180319.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max] gi|356521809|ref|XP_003529543.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23316:SF22
1 187 187 2.50E-121 –
PANTHER
PTHR23316
1 187 187 2.50E-121 –
ProSiteProfiles
PS51214
1 58 58 15.197
IPR002652
Gene3D
G3DSA:1.25.10.10
10 187 178 5.60E-45
IPR011989
SUPERFAMILY
SSF48371
12 187 176 3.46E-41
IPR016024
Pfam
PF01749
12 90 79 2.90E-21
IPR002652
MobiDBLite
mobidb-lite
41 61 21 – –
SMART
SM00185
101 142 42 2.10E-08
IPR000225
Pfam
PF00514
102 142 41 2.90E-10
IPR000225
CDD
cd00020
106 187 82 1.17E-25 –
ProSiteProfiles
PS50176
112 155 44 10.202
IPR000225
SMART
SM00185
144 184 41 6.70E-10
IPR000225
Pfam
PF00514
145 183 39 1.80E-13
IPR000225
ProSiteProfiles
PS50176
155 187 33 12.267
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006606
Biological process Protein import into nucleus The directed movement of a protein from the cytoplasm to the nucleus.
Subterm of
GO:0061608
Molecular function Nuclear import signal receptor activity Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0180319.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0180319.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.