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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0188219 |
| Transcript ID | Lj0g3v0188219.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356524338|ref|XP_003530786.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 454 | 454 | 0 | – | |
| ProSiteProfiles | 1 | 173 | 173 | 18.82 | ||
| PANTHER | 1 | 454 | 454 | 0 | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| SUPERFAMILY | 3 | 192 | 190 | 2.49E-28 | ||
| Gene3D | 3 | 188 | 186 | 4.40E-33 | – | |
| TMHMM | 5 | 24 | 20 | – | – | |
| Pfam | 9 | 135 | 127 | 2.90E-14 | ||
| Phobius | 27 | 45 | 19 | – | – | |
| TMHMM | 28 | 45 | 18 | – | – | |
| Phobius | 46 | 114 | 69 | – | – | |
| TMHMM | 114 | 136 | 23 | – | – | |
| Phobius | 115 | 137 | 23 | – | – | |
| Phobius | 138 | 454 | 317 | – | – | |
| TMHMM | 146 | 168 | 23 | – | – | |
| SUPERFAMILY | 201 | 435 | 235 | 1.81E-64 | ||
| CDD | 208 | 428 | 221 | 3.83E-122 | – | |
| ProSiteProfiles | 210 | 444 | 235 | 18.381 | ||
| Gene3D | 210 | 445 | 236 | 9.70E-61 | ||
| Pfam | 228 | 375 | 148 | 4.80E-30 | ||
| SMART | 236 | 421 | 186 | 1.00E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0188219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0188219.1, powered by CORGI.
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