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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0195829 |
| Transcript ID | Lj0g3v0195829.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | – | – | |
| Phobius | 1 | 1196 | 1196 | – | – | |
| PANTHER | 149 | 215 | 67 | 0 | – | |
| PANTHER | 149 | 215 | 67 | 0 | – | |
| Coils | 195 | 215 | 21 | – | – | |
| Coils | 234 | 263 | 30 | – | – | |
| Coils | 267 | 287 | 21 | – | – | |
| MobiDBLite | 327 | 369 | 43 | – | – | |
| PANTHER | 374 | 405 | 32 | 0 | – | |
| PANTHER | 374 | 405 | 32 | 0 | – | |
| Coils | 381 | 401 | 21 | – | – | |
| MobiDBLite | 382 | 418 | 37 | – | – | |
| PANTHER | 422 | 490 | 69 | 0 | – | |
| PANTHER | 422 | 490 | 69 | 0 | – | |
| Coils | 439 | 459 | 21 | – | – | |
| SUPERFAMILY | 466 | 519 | 54 | 5.93E-06 | – | |
| CDD | 472 | 519 | 48 | 6.92E-04 | – | |
| MobiDBLite | 604 | 638 | 35 | – | – | |
| PANTHER | 611 | 886 | 276 | 0 | – | |
| PANTHER | 611 | 886 | 276 | 0 | – | |
| SUPERFAMILY | 669 | 875 | 207 | 1.37E-62 | ||
| SMART | 670 | 875 | 206 | 5.20E-26 | ||
| Gene3D | 675 | 845 | 171 | 9.40E-40 | ||
| ProSiteProfiles | 685 | 861 | 177 | 18.997 | ||
| Pfam | 686 | 844 | 159 | 4.10E-09 | ||
| CDD | 693 | 842 | 150 | 4.25E-22 | – | |
| Coils | 945 | 965 | 21 | – | – | |
| PANTHER | 954 | 1321 | 368 | 0 | – | |
| PANTHER | 954 | 1321 | 368 | 0 | – | |
| SUPERFAMILY | 956 | 1291 | 336 | 1.37E-62 | ||
| ProSiteProfiles | 964 | 1139 | 176 | 15.747 | ||
| Pfam | 965 | 1097 | 133 | 3.00E-13 | ||
| Gene3D | 966 | 1114 | 149 | 8.50E-14 | ||
| SMART | 992 | 1098 | 107 | 1.70E-14 | ||
| SMART | 1161 | 1264 | 104 | 3.20E-22 | ||
| Pfam | 1162 | 1261 | 100 | 7.30E-17 | ||
| Phobius | 1197 | 1217 | 21 | – | – | |
| Phobius | 1218 | 1522 | 305 | – | – | |
| Pfam | 1305 | 1451 | 147 | 7.80E-21 | ||
| PANTHER | 1341 | 1518 | 178 | 0 | – | |
| PANTHER | 1341 | 1518 | 178 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0195829.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0195829.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.