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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0195839 |
| Transcript ID | Lj0g3v0195839.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 1138 | 1138 | – | – | |
| Coils | 195 | 215 | 21 | – | – | |
| Coils | 234 | 263 | 30 | – | – | |
| Coils | 267 | 287 | 21 | – | – | |
| MobiDBLite | 328 | 363 | 36 | – | – | |
| PANTHER | 333 | 435 | 103 | 0 | – | |
| PANTHER | 333 | 435 | 103 | 0 | – | |
| Coils | 377 | 401 | 25 | – | – | |
| SUPERFAMILY | 408 | 461 | 54 | 5.93E-06 | – | |
| CDD | 414 | 461 | 48 | 6.28E-04 | – | |
| PANTHER | 479 | 828 | 350 | 0 | – | |
| PANTHER | 479 | 828 | 350 | 0 | – | |
| MobiDBLite | 546 | 580 | 35 | – | – | |
| SUPERFAMILY | 611 | 817 | 207 | 1.28E-62 | ||
| SMART | 612 | 817 | 206 | 5.20E-26 | ||
| Gene3D | 617 | 787 | 171 | 8.90E-40 | ||
| ProSiteProfiles | 627 | 803 | 177 | 18.997 | ||
| Pfam | 628 | 786 | 159 | 3.90E-09 | ||
| CDD | 635 | 784 | 150 | 4.38E-22 | – | |
| Coils | 887 | 907 | 21 | – | – | |
| PANTHER | 896 | 1263 | 368 | 0 | – | |
| PANTHER | 896 | 1263 | 368 | 0 | – | |
| SUPERFAMILY | 898 | 1233 | 336 | 1.28E-62 | ||
| ProSiteProfiles | 906 | 1081 | 176 | 15.747 | ||
| Pfam | 907 | 1039 | 133 | 2.90E-13 | ||
| Gene3D | 908 | 1056 | 149 | 8.00E-14 | ||
| SMART | 934 | 1040 | 107 | 1.70E-14 | ||
| SMART | 1103 | 1206 | 104 | 3.20E-22 | ||
| Pfam | 1104 | 1203 | 100 | 6.90E-17 | ||
| Phobius | 1139 | 1159 | 21 | – | – | |
| Phobius | 1160 | 1464 | 305 | – | – | |
| Pfam | 1247 | 1393 | 147 | 7.40E-21 | ||
| PANTHER | 1283 | 1460 | 178 | 0 | – | |
| PANTHER | 1283 | 1460 | 178 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0195839.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0195839.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.