Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0212129.1

Overview

Field Value
Gene ID Lj0g3v0212129
Transcript ID Lj0g3v0212129.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB57 [Glycine max] gi|351721486|ref|NP_001235675.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078
22 201 180 1.60E-68 –
PANTHER
PTHR24078:SF279
22 201 180 1.60E-68 –
ProSiteProfiles
PS51293
25 80 56 9.127
IPR017884
SMART
SM00717
26 78 53 1.40E-07
IPR001005
SUPERFAMILY
SSF46689
28 82 55 1.88E-10
IPR009057
Pfam
PF00249
29 75 47 4.70E-07
IPR001005
CDD
cd00167
29 75 47 2.37E-07 –
MobiDBLite
mobidb-lite
113 133 21 – –
ProSiteProfiles
PS51294
127 183 57 20.486
IPR017930
SUPERFAMILY
SSF46689
128 182 55 8.28E-17
IPR009057
TIGRFAM
TIGR01557
130 182 53 1.60E-17
IPR006447
Gene3D
G3DSA:1.10.10.60
131 178 48 3.70E-12
IPR009057
SMART
SM00717
131 181 51 5.30E-13
IPR001005
Pfam
PF00249
134 178 45 1.20E-12
IPR001005
CDD
cd00167
134 179 46 4.68E-11 –
MobiDBLite
mobidb-lite
200 240 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0212129.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0212129.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.