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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0213179 |
| Transcript ID | Lj0g3v0213179.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: endochitinase-like [Cicer arietinum] gi|502153653|ref|XP_004509418.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 323 | 323 | 4.40E-207 | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 323 | 323 | 4.40E-207 | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| PIRSF | 2 | 324 | 323 | 4.20E-122 | ||
| Phobius | 6 | 18 | 13 | – | – | |
| Phobius | 19 | 22 | 4 | – | – | |
| ProSiteProfiles | 22 | 63 | 42 | 10.796 | ||
| Gene3D | 23 | 71 | 49 | 4.10E-17 | ||
| ProDom | 23 | 61 | 39 | 5.00E-12 | ||
| CDD | 23 | 62 | 40 | 5.74E-17 | – | |
| Phobius | 23 | 324 | 302 | – | – | |
| SMART | 24 | 61 | 38 | 3.70E-16 | ||
| SUPERFAMILY | 24 | 70 | 47 | 8.25E-14 | ||
| Pfam | 24 | 61 | 38 | 6.20E-14 | ||
| PRINTS | 32 | 40 | 9 | 1.80E-06 | ||
| ProSitePatterns | 34 | 53 | 20 | – | ||
| PRINTS | 40 | 47 | 8 | 1.80E-06 | ||
| PRINTS | 47 | 54 | 8 | 1.80E-06 | ||
| SUPERFAMILY | 85 | 323 | 239 | 6.47E-106 | ||
| Gene3D | 85 | 154 | 70 | 3.20E-85 | – | |
| Pfam | 88 | 317 | 230 | 1.20E-121 | ||
| CDD | 89 | 317 | 229 | 2.60E-143 | ||
| ProSitePatterns | 106 | 128 | 23 | – | ||
| Gene3D | 192 | 323 | 132 | 3.20E-85 | – | |
| ProSitePatterns | 230 | 240 | 11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of Lj0g3v0213179.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0213179.1, powered by CORGI.
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