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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0221429 |
| Transcript ID | Lj0g3v0221429.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 30S ribosomal protein S1 homolog [Glycine max] gi|356538073|ref|XP_003537529.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 22 | 8 | – | – | |
| MobiDBLite | 17 | 37 | 21 | – | – | |
| Phobius | 23 | 400 | 378 | – | – | |
| PANTHER | 47 | 400 | 354 | 6.70E-206 | – | |
| PANTHER | 47 | 400 | 354 | 6.70E-206 | – | |
| MobiDBLite | 65 | 104 | 40 | – | – | |
| Gene3D | 109 | 195 | 87 | 1.10E-08 | – | |
| SMART | 117 | 194 | 78 | 0.0018 | ||
| SUPERFAMILY | 118 | 194 | 77 | 1.34E-06 | ||
| ProSiteProfiles | 119 | 194 | 76 | 11.944 | ||
| Gene3D | 199 | 284 | 86 | 1.10E-28 | – | |
| Pfam | 205 | 282 | 78 | 3.70E-17 | ||
| SUPERFAMILY | 206 | 295 | 90 | 2.24E-21 | ||
| SMART | 206 | 282 | 77 | 1.40E-20 | ||
| ProSiteProfiles | 208 | 282 | 75 | 20.134 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj0g3v0221429.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0221429.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.