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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0237819 |
| Transcript ID | Lj0g3v0237819.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Glycine max] gi|356541846|ref|XP_003539383.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 590 | 558 | 0 | – | |
| PANTHER | 33 | 590 | 558 | 0 | – | |
| MobiDBLite | 41 | 78 | 38 | – | – | |
| ProSiteProfiles | 118 | 153 | 36 | 8.068 | ||
| Pfam | 120 | 143 | 24 | 0.78 | ||
| SUPERFAMILY | 128 | 369 | 242 | 6.83E-10 | ||
| Pfam | 150 | 179 | 30 | 4.00E-07 | ||
| Gene3D | 154 | 439 | 286 | 1.30E-19 | ||
| ProSiteProfiles | 154 | 184 | 31 | 8.923 | ||
| TIGRFAM | 156 | 181 | 26 | 7.90E-04 | ||
| ProSiteProfiles | 190 | 224 | 35 | 9.799 | ||
| TIGRFAM | 192 | 225 | 34 | 2.70E-04 | ||
| Pfam | 192 | 221 | 30 | 9.80E-04 | ||
| ProSiteProfiles | 225 | 255 | 31 | 10.271 | ||
| Pfam | 228 | 255 | 28 | 1.50E-05 | ||
| TIGRFAM | 228 | 260 | 33 | 1.80E-05 | ||
| ProSiteProfiles | 260 | 294 | 35 | 5.667 | ||
| ProSiteProfiles | 295 | 329 | 35 | 10.139 | ||
| Pfam | 297 | 325 | 29 | 0.035 | ||
| TIGRFAM | 297 | 330 | 34 | 1.50E-04 | ||
| ProSiteProfiles | 335 | 369 | 35 | 7.761 | ||
| Pfam | 338 | 361 | 24 | 0.28 | ||
| ProSiteProfiles | 374 | 408 | 35 | 10.918 | ||
| Pfam | 374 | 420 | 47 | 1.30E-10 | ||
| TIGRFAM | 378 | 410 | 33 | 1.20E-05 | ||
| ProSiteProfiles | 409 | 443 | 35 | 11.126 | ||
| SUPERFAMILY | 410 | 437 | 28 | 6.83E-10 | ||
| TIGRFAM | 412 | 441 | 30 | 2.10E-06 | ||
| ProSiteProfiles | 444 | 478 | 35 | 5.218 | ||
| ProSiteProfiles | 479 | 513 | 35 | 9.24 | ||
| Pfam | 482 | 511 | 30 | 0.045 | ||
| MobiDBLite | 538 | 571 | 34 | – | – | |
| MobiDBLite | 591 | 758 | 168 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0237819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0237819.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.