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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0245539 |
| Transcript ID | Lj0g3v0245539.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 266 | 266 | – | – | |
| Gene3D | 5 | 90 | 86 | 1.60E-30 | ||
| SUPERFAMILY | 6 | 91 | 86 | 8.95E-34 | – | |
| Pfam | 11 | 85 | 75 | 6.10E-37 | ||
| ProSiteProfiles | 21 | 67 | 47 | 8.594 | ||
| PANTHER | 58 | 214 | 157 | 0 | – | |
| PANTHER | 58 | 214 | 157 | 0 | – | |
| PANTHER | 234 | 639 | 406 | 0 | – | |
| PANTHER | 234 | 639 | 406 | 0 | – | |
| Phobius | 267 | 286 | 20 | – | – | |
| TMHMM | 270 | 287 | 18 | – | – | |
| Phobius | 287 | 292 | 6 | – | – | |
| Phobius | 293 | 313 | 21 | – | – | |
| TMHMM | 294 | 313 | 20 | – | – | |
| Phobius | 314 | 836 | 523 | – | – | |
| Pfam | 347 | 1052 | 706 | 0 | ||
| SUPERFAMILY | 361 | 409 | 49 | 2.25E-09 | ||
| SUPERFAMILY | 499 | 620 | 122 | 2.25E-09 | ||
| MobiDBLite | 632 | 666 | 35 | – | – | |
| PANTHER | 682 | 1044 | 363 | 0 | – | |
| PANTHER | 682 | 1044 | 363 | 0 | – | |
| SUPERFAMILY | 737 | 869 | 133 | 2.25E-09 | ||
| TMHMM | 835 | 857 | 23 | – | – | |
| Phobius | 837 | 857 | 21 | – | – | |
| Phobius | 858 | 868 | 11 | – | – | |
| Phobius | 869 | 887 | 19 | – | – | |
| TMHMM | 869 | 891 | 23 | – | – | |
| Phobius | 888 | 906 | 19 | – | – | |
| TMHMM | 906 | 928 | 23 | – | – | |
| Phobius | 907 | 929 | 23 | – | – | |
| Phobius | 930 | 956 | 27 | – | – | |
| TMHMM | 954 | 976 | 23 | – | – | |
| Phobius | 957 | 978 | 22 | – | – | |
| Phobius | 979 | 989 | 11 | – | – | |
| TMHMM | 986 | 1008 | 23 | – | – | |
| Phobius | 990 | 1008 | 19 | – | – | |
| Phobius | 1009 | 1019 | 11 | – | – | |
| Phobius | 1020 | 1040 | 21 | – | – | |
| TMHMM | 1021 | 1040 | 20 | – | – | |
| Phobius | 1041 | 1059 | 19 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj0g3v0245539.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0245539.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.