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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0249089 |
| Transcript ID | Lj0g3v0249089.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 1 [UDP]-forming] gi|502132343|ref|XP_004501313.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 274 | 274 | – | – | |
| Gene3D | 25 | 114 | 90 | 7.00E-36 | ||
| SUPERFAMILY | 25 | 112 | 88 | 5.06E-37 | – | |
| Pfam | 30 | 107 | 78 | 8.00E-43 | ||
| ProSiteProfiles | 40 | 86 | 47 | 9.052 | ||
| PANTHER | 77 | 667 | 591 | 0 | – | |
| PANTHER | 77 | 667 | 591 | 0 | – | |
| MobiDBLite | 118 | 158 | 41 | – | – | |
| MobiDBLite | 183 | 202 | 20 | – | – | |
| Phobius | 275 | 293 | 19 | – | – | |
| Phobius | 294 | 304 | 11 | – | – | |
| Phobius | 305 | 324 | 20 | – | – | |
| Phobius | 325 | 860 | 536 | – | – | |
| Pfam | 358 | 1074 | 717 | 0 | ||
| SUPERFAMILY | 376 | 419 | 44 | 4.16E-07 | ||
| SUPERFAMILY | 519 | 658 | 140 | 4.16E-07 | ||
| PANTHER | 707 | 1069 | 363 | 0 | – | |
| PANTHER | 707 | 1069 | 363 | 0 | – | |
| TMHMM | 860 | 882 | 23 | – | – | |
| Phobius | 861 | 882 | 22 | – | – | |
| Phobius | 883 | 893 | 11 | – | – | |
| Phobius | 894 | 917 | 24 | – | – | |
| TMHMM | 894 | 916 | 23 | – | – | |
| Phobius | 918 | 928 | 11 | – | – | |
| Phobius | 929 | 948 | 20 | – | – | |
| TMHMM | 931 | 953 | 23 | – | – | |
| Phobius | 949 | 981 | 33 | – | – | |
| TMHMM | 979 | 1001 | 23 | – | – | |
| Phobius | 982 | 1005 | 24 | – | – | |
| Phobius | 1006 | 1010 | 5 | – | – | |
| TMHMM | 1011 | 1033 | 23 | – | – | |
| Phobius | 1011 | 1033 | 23 | – | – | |
| Phobius | 1034 | 1044 | 11 | – | – | |
| Phobius | 1045 | 1065 | 21 | – | – | |
| TMHMM | 1046 | 1065 | 20 | – | – | |
| Phobius | 1066 | 1083 | 18 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj0g3v0249089.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0249089.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.