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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0267429 |
| Transcript ID | Lj0g3v0267429.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: squalene monooxygenase-like [Glycine max] gi|356569981|ref|XP_003553171.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 16 | 16 | – | – | |
| Phobius | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 16 | 13 | – | – | |
| Phobius | 17 | 28 | 12 | – | – | |
| Phobius | 29 | 462 | 434 | – | – | |
| PANTHER | 86 | 428 | 343 | 5.00E-245 | – | |
| PANTHER | 86 | 428 | 343 | 5.00E-245 | – | |
| SUPERFAMILY | 90 | 262 | 173 | 1.30E-41 | ||
| Gene3D | 90 | 265 | 176 | 1.70E-25 | ||
| Pfam | 91 | 121 | 31 | 6.60E-06 | ||
| PRINTS | 91 | 113 | 23 | 3.10E-10 | – | |
| PRINTS | 241 | 256 | 16 | 3.10E-10 | – | |
| Pfam | 242 | 431 | 190 | 1.40E-78 | ||
| Gene3D | 324 | 380 | 57 | 6.50E-04 | – | |
| SUPERFAMILY | 356 | 430 | 75 | 1.30E-41 | ||
| PRINTS | 369 | 384 | 16 | 3.10E-10 | – | |
| Gene3D | 381 | 401 | 21 | 1.70E-25 | ||
| PRINTS | 384 | 400 | 17 | 3.10E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj0g3v0267429.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0267429.3, powered by CORGI.
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