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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0278899 |
| Transcript ID | Lj0g3v0278899.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic-like [Glycine max] gi|356569143|ref|XP_003552765.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 16 | 16 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 2 | 12 | 11 | – | – | |
| PANTHER | 7 | 33 | 27 | 0 | – | |
| PANTHER | 7 | 33 | 27 | 0 | – | |
| Phobius | 13 | 30 | 18 | – | – | |
| MobiDBLite | 14 | 33 | 20 | – | – | |
| Phobius | 31 | 670 | 640 | – | – | |
| PANTHER | 63 | 90 | 28 | 0 | – | |
| PANTHER | 63 | 90 | 28 | 0 | – | |
| ProSiteProfiles | 110 | 144 | 35 | 5.119 | ||
| PANTHER | 121 | 664 | 544 | 0 | – | |
| PANTHER | 121 | 664 | 544 | 0 | – | |
| Pfam | 145 | 192 | 48 | 9.80E-13 | ||
| ProSiteProfiles | 146 | 180 | 35 | 10.885 | ||
| TIGRFAM | 149 | 181 | 33 | 7.10E-06 | ||
| ProSiteProfiles | 181 | 215 | 35 | 9.032 | ||
| SUPERFAMILY | 204 | 283 | 80 | 1.02E-05 | – | |
| ProSiteProfiles | 216 | 250 | 35 | 9.01 | ||
| Gene3D | 217 | 313 | 97 | 5.50E-10 | ||
| Pfam | 250 | 294 | 45 | 5.00E-11 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.178 | ||
| TIGRFAM | 254 | 287 | 34 | 2.10E-09 | ||
| ProSiteProfiles | 286 | 320 | 35 | 9.997 | ||
| TIGRFAM | 288 | 321 | 34 | 3.10E-05 | ||
| ProSiteProfiles | 321 | 355 | 35 | 11.378 | ||
| Pfam | 321 | 365 | 45 | 5.50E-10 | ||
| TIGRFAM | 324 | 357 | 34 | 8.00E-07 | ||
| Gene3D | 351 | 481 | 131 | 5.50E-10 | ||
| SUPERFAMILY | 355 | 465 | 111 | 1.02E-05 | – | |
| ProSiteProfiles | 356 | 390 | 35 | 11.115 | ||
| TIGRFAM | 358 | 391 | 34 | 1.20E-06 | ||
| Pfam | 391 | 434 | 44 | 6.10E-15 | ||
| ProSiteProfiles | 391 | 425 | 35 | 12.178 | ||
| TIGRFAM | 393 | 427 | 35 | 5.50E-08 | ||
| ProSiteProfiles | 426 | 460 | 35 | 10.249 | ||
| TIGRFAM | 428 | 461 | 34 | 8.10E-04 | ||
| ProSiteProfiles | 461 | 495 | 35 | 8.955 | ||
| Pfam | 463 | 490 | 28 | 0.075 | ||
| ProSiteProfiles | 527 | 561 | 35 | 10.633 | ||
| TIGRFAM | 530 | 562 | 33 | 2.50E-05 | ||
| Pfam | 530 | 558 | 29 | 3.00E-04 | ||
| ProSiteProfiles | 562 | 596 | 35 | 7.837 | ||
| Pfam | 569 | 594 | 26 | 0.7 | ||
| TIGRFAM | 569 | 598 | 30 | 7.10E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0278899.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0278899.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.