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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0281099 |
| Transcript ID | Lj0g3v0281099.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] gi|356568398|ref|XP_003552398.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 4 | 19 | 16 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| PANTHER | 14 | 513 | 500 | 0 | ||
| PANTHER | 14 | 513 | 500 | 0 | – | |
| Phobius | 20 | 24 | 5 | – | – | |
| Phobius | 25 | 193 | 169 | – | – | |
| Pfam | 89 | 167 | 79 | 7.30E-11 | ||
| Gene3D | 92 | 180 | 89 | 9.30E-19 | – | |
| SUPERFAMILY | 99 | 144 | 46 | 1.01E-08 | – | |
| TMHMM | 194 | 213 | 20 | – | – | |
| Phobius | 194 | 215 | 22 | – | – | |
| Phobius | 216 | 242 | 27 | – | – | |
| TMHMM | 242 | 264 | 23 | – | – | |
| SMART | 243 | 512 | 270 | 3.60E-88 | ||
| Pfam | 243 | 512 | 270 | 6.50E-77 | ||
| Phobius | 243 | 267 | 25 | – | – | |
| Phobius | 268 | 272 | 5 | – | – | |
| Phobius | 273 | 304 | 32 | – | – | |
| TMHMM | 277 | 299 | 23 | – | – | |
| Phobius | 305 | 315 | 11 | – | – | |
| Phobius | 316 | 340 | 25 | – | – | |
| TMHMM | 319 | 341 | 23 | – | – | |
| Phobius | 341 | 345 | 5 | – | – | |
| TMHMM | 346 | 368 | 23 | – | – | |
| Phobius | 346 | 366 | 21 | – | – | |
| Phobius | 367 | 372 | 6 | – | – | |
| Phobius | 373 | 391 | 19 | – | – | |
| Phobius | 392 | 427 | 36 | – | – | |
| TMHMM | 428 | 450 | 23 | – | – | |
| Phobius | 428 | 450 | 23 | – | – | |
| Phobius | 451 | 461 | 11 | – | – | |
| Phobius | 462 | 483 | 22 | – | – | |
| TMHMM | 463 | 482 | 20 | – | – | |
| Phobius | 484 | 488 | 5 | – | – | |
| Phobius | 489 | 508 | 20 | – | – | |
| TMHMM | 492 | 509 | 18 | – | – | |
| Phobius | 509 | 513 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0281099.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0281099.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.