Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj0g3v0299849 |
| Transcript ID | Lj0g3v0299849.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: inactive rhomboid protein 1-like [Glycine max] gi|356557429|ref|XP_003547018.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | – | – | |
| Phobius | 1 | 101 | 101 | – | – | |
| PANTHER | 51 | 317 | 267 | 1.70E-196 | ||
| PANTHER | 51 | 317 | 267 | 1.70E-196 | – | |
| Gene3D | 74 | 229 | 156 | 2.80E-52 | ||
| SUPERFAMILY | 77 | 234 | 158 | 2.62E-39 | – | |
| Pfam | 90 | 232 | 143 | 1.10E-39 | ||
| Phobius | 102 | 123 | 22 | – | – | |
| TMHMM | 102 | 124 | 23 | – | – | |
| Phobius | 124 | 134 | 11 | – | – | |
| TMHMM | 131 | 153 | 23 | – | – | |
| Phobius | 135 | 153 | 19 | – | – | |
| Phobius | 154 | 158 | 5 | – | – | |
| TMHMM | 158 | 180 | 23 | – | – | |
| Phobius | 159 | 180 | 22 | – | – | |
| Phobius | 181 | 186 | 6 | – | – | |
| TMHMM | 187 | 209 | 23 | – | – | |
| Phobius | 187 | 206 | 20 | – | – | |
| Phobius | 207 | 211 | 5 | – | – | |
| Phobius | 212 | 230 | 19 | – | – | |
| TMHMM | 213 | 230 | 18 | – | – | |
| Phobius | 231 | 259 | 29 | – | – | |
| Phobius | 260 | 282 | 23 | – | – | |
| TMHMM | 260 | 282 | 23 | – | – | |
| Phobius | 283 | 353 | 71 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0299849.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj0g3v0299849.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.