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Lj0g3v0302789.1

Overview

Field Value
Gene ID Lj0g3v0302789
Transcript ID Lj0g3v0302789.1
Lotus japonicus genome version MG20 v3.0
Description AT hook motif DNA-binding family protein isoform 1 [Theobroma cacao] gi|508704093|gb|EOX95989.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 236 236 – –
PANTHER
PTHR31500:SF10
2 331 330 1.20E-179 –
PANTHER
PTHR31500
2 331 330 1.20E-179 –
MobiDBLite
mobidb-lite
15 130 116 – –
SMART
SM00384
78 90 13 0.84
IPR017956
SMART
SM00384
114 126 13 9.2
IPR017956
ProSiteProfiles
PS51742
140 281 142 34.789
IPR005175
SUPERFAMILY
SSF117856
144 261 118 1.54E-27 –
Gene3D
G3DSA:3.30.1330.80
144 281 138 1.20E-28 –
Pfam
PF03479
145 259 115 1.50E-26
IPR005175
CDD
cd11378
145 259 115 2.92E-22
IPR005175
Phobius
TRANSMEMBRANE
237 261 25 – –
TMHMM
TMhelix
237 259 23 – –
Phobius
CYTOPLASMIC_DOMAIN
262 332 71 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 47

Expression data

Expression pattern

Expression pattern of Lj0g3v0302789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0302789.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.