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Lj0g3v0304589.1

Overview

Field Value
Gene ID Lj0g3v0304589
Transcript ID Lj0g3v0304589.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 729 729 – –
MobiDBLite
mobidb-lite
1 75 75 – –
PANTHER
PTHR23253:SF26
4 231 228 0 –
PANTHER
PTHR23253
4 231 228 0 –
MobiDBLite
mobidb-lite
97 140 44 – –
MobiDBLite
mobidb-lite
185 215 31 – –
PANTHER
PTHR23253:SF26
284 734 451 0 –
PANTHER
PTHR23253
284 734 451 0 –
SUPERFAMILY
SSF48371
336 566 231 3.71E-70
IPR016024
Gene3D
G3DSA:1.25.40.180
342 581 240 4.30E-85
IPR016021
SMART
SM00543
342 564 223 7.20E-51
IPR003890
Pfam
PF02854
342 564 223 2.70E-55
IPR003890
Coils
Coil
424 444 21 – –
MobiDBLite
mobidb-lite
434 458 25 – –
MobiDBLite
mobidb-lite
582 669 88 – –
MobiDBLite
mobidb-lite
681 717 37 – –
Phobius
TRANSMEMBRANE
730 747 18 – –
Phobius
CYTOPLASMIC_DOMAIN
748 748 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0304589.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0304589.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.