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Lj0g3v0308069.1

Overview

Field Value
Gene ID Lj0g3v0308069
Transcript ID Lj0g3v0308069.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase ARI3-like [Glycine max] gi|356522436|ref|XP_003529852.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR11685
25 238 214 5.20E-87
IPR031127
PANTHER
PTHR11685:SF133
25 238 214 5.20E-87 –
Gene3D
G3DSA:3.30.40.10
32 107 76 1.10E-05
IPR013083
SUPERFAMILY
SSF57850
41 122 82 1.55E-15 –
ProSiteProfiles
PS50089
45 90 46 9.952
IPR001841
SMART
SM00184
45 92 48 0.049
IPR001841
ProSitePatterns
PS00518
63 72 10 –
IPR017907
SMART
SM00647
113 175 63 5.60E-13
IPR002867
SUPERFAMILY
SSF57850
127 179 53 1.55E-08 –
Pfam
PF01485
129 175 47 1.00E-10
IPR002867
SMART
SM00184
132 209 78 7.5
IPR001841
SMART
SM00647
184 244 61 0.067
IPR002867
SUPERFAMILY
SSF57850
193 243 51 1.84E-13 –
Pfam
PF01485
197 243 47 2.40E-08
IPR002867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0308069.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0308069.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.