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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0315799 |
| Transcript ID | Lj0g3v0315799.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357503117|ref|XP_003621847.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 506 | 470 | 1.10E-206 | – | |
| PANTHER | 37 | 506 | 470 | 1.10E-206 | – | |
| ProSiteProfiles | 55 | 89 | 35 | 7.136 | ||
| Pfam | 89 | 135 | 47 | 3.60E-12 | ||
| ProSiteProfiles | 90 | 124 | 35 | 12.54 | ||
| TIGRFAM | 92 | 126 | 35 | 2.70E-07 | ||
| ProSiteProfiles | 125 | 159 | 35 | 11.027 | ||
| TIGRFAM | 127 | 161 | 35 | 5.90E-06 | ||
| Gene3D | 136 | 398 | 263 | 1.50E-12 | ||
| Pfam | 157 | 185 | 29 | 1.10E-05 | ||
| ProSiteProfiles | 160 | 195 | 36 | 10.216 | ||
| TIGRFAM | 163 | 186 | 24 | 7.60E-06 | ||
| Pfam | 195 | 244 | 50 | 3.30E-16 | ||
| ProSiteProfiles | 196 | 230 | 35 | 13.022 | ||
| TIGRFAM | 199 | 230 | 32 | 1.90E-09 | ||
| ProSiteProfiles | 231 | 265 | 35 | 12.419 | ||
| TIGRFAM | 234 | 267 | 34 | 1.70E-09 | ||
| Pfam | 265 | 314 | 50 | 2.60E-07 | ||
| ProSiteProfiles | 266 | 300 | 35 | 11.257 | ||
| TIGRFAM | 268 | 299 | 32 | 4.20E-07 | ||
| SUPERFAMILY | 269 | 374 | 106 | 2.73E-06 | ||
| ProSiteProfiles | 301 | 335 | 35 | 10.939 | ||
| TIGRFAM | 304 | 336 | 33 | 3.90E-07 | ||
| Pfam | 335 | 384 | 50 | 4.60E-12 | ||
| ProSiteProfiles | 336 | 370 | 35 | 10.819 | ||
| TIGRFAM | 339 | 367 | 29 | 4.30E-07 | ||
| ProSiteProfiles | 371 | 405 | 35 | 9.832 | ||
| TIGRFAM | 373 | 403 | 31 | 2.10E-04 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.539 | ||
| Pfam | 410 | 436 | 27 | 0.0018 | ||
| TIGRFAM | 411 | 436 | 26 | 1.80E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0315799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0315799.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.