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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0318659 |
| Transcript ID | Lj0g3v0318659.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | type IIB calcium ATPase [Medicago truncatula] gi|18483249|gb|AAL73984.1|AF466149_1 |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 615 | 615 | 0 | – | |
| PANTHER | 1 | 615 | 615 | 0 | – | |
| TIGRFAM | 2 | 616 | 615 | 3.50E-206 | ||
| SUPERFAMILY | 3 | 73 | 71 | 1.57E-32 | – | |
| TMHMM | 10 | 27 | 18 | – | – | |
| Phobius | 12 | 28 | 17 | – | – | |
| Gene3D | 17 | 172 | 156 | 1.50E-29 | ||
| Phobius | 29 | 39 | 11 | – | – | |
| Phobius | 40 | 59 | 20 | – | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| Pfam | 43 | 281 | 239 | 9.40E-45 | ||
| Phobius | 60 | 191 | 132 | – | – | |
| SUPERFAMILY | 74 | 170 | 97 | 4.05E-24 | – | |
| PRINTS | 121 | 135 | 15 | 4.00E-26 | – | |
| SUPERFAMILY | 173 | 284 | 112 | 1.57E-32 | – | |
| TMHMM | 192 | 214 | 23 | – | – | |
| Phobius | 192 | 214 | 23 | – | – | |
| Phobius | 215 | 233 | 19 | – | – | |
| TIGRFAM | 230 | 312 | 83 | 1.70E-20 | ||
| TMHMM | 234 | 256 | 23 | – | – | |
| Phobius | 234 | 262 | 29 | – | – | |
| Phobius | 263 | 616 | 354 | – | – | |
| SUPERFAMILY | 278 | 302 | 25 | 1.71E-33 | ||
| Gene3D | 280 | 488 | 209 | 4.60E-46 | ||
| Pfam | 289 | 605 | 317 | 1.20E-15 | – | |
| PRINTS | 290 | 304 | 15 | 4.00E-26 | – | |
| ProSitePatterns | 292 | 298 | 7 | – | ||
| SUPERFAMILY | 296 | 500 | 205 | 3.43E-44 | ||
| PRINTS | 448 | 466 | 19 | 2.50E-07 | ||
| SUPERFAMILY | 486 | 615 | 130 | 1.71E-33 | ||
| PRINTS | 488 | 499 | 12 | 4.00E-26 | – | |
| Gene3D | 489 | 615 | 127 | 4.10E-44 | ||
| PRINTS | 510 | 520 | 11 | 4.00E-26 | – | |
| PRINTS | 591 | 610 | 20 | 4.00E-26 | – | |
| PRINTS | 591 | 607 | 17 | 2.50E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj0g3v0318659.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0318659.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.