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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0323379 |
| Transcript ID | Lj0g3v0323379.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] gi|356497238|ref|XP_003517469.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | – | – | |
| SignalP | 1 | 29 | 29 | – | – | |
| Phobius | 1 | 8 | 8 | – | – | |
| SignalP | 1 | 29 | 29 | – | – | |
| TMHMM | 7 | 24 | 18 | – | – | |
| Phobius | 9 | 21 | 13 | – | – | |
| PANTHER | 19 | 515 | 497 | 0 | – | |
| PANTHER | 19 | 515 | 497 | 0 | ||
| Phobius | 22 | 29 | 8 | – | – | |
| Phobius | 30 | 198 | 169 | – | – | |
| Gene3D | 91 | 186 | 96 | 8.00E-17 | – | |
| Pfam | 97 | 172 | 76 | 3.70E-08 | ||
| SUPERFAMILY | 106 | 144 | 39 | 7.85E-06 | – | |
| TMHMM | 196 | 218 | 23 | – | – | |
| Phobius | 199 | 217 | 19 | – | – | |
| Phobius | 218 | 255 | 38 | – | – | |
| SMART | 248 | 515 | 268 | 4.30E-88 | ||
| TMHMM | 250 | 272 | 23 | – | – | |
| Pfam | 251 | 512 | 262 | 4.00E-78 | ||
| Phobius | 256 | 272 | 17 | – | – | |
| Phobius | 273 | 277 | 5 | – | – | |
| Phobius | 278 | 307 | 30 | – | – | |
| TMHMM | 282 | 304 | 23 | – | – | |
| Phobius | 308 | 318 | 11 | – | – | |
| TMHMM | 317 | 339 | 23 | – | – | |
| Phobius | 319 | 343 | 25 | – | – | |
| Phobius | 344 | 348 | 5 | – | – | |
| TMHMM | 349 | 371 | 23 | – | – | |
| Phobius | 349 | 369 | 21 | – | – | |
| Phobius | 370 | 375 | 6 | – | – | |
| TMHMM | 376 | 395 | 20 | – | – | |
| Phobius | 376 | 394 | 19 | – | – | |
| Phobius | 395 | 430 | 36 | – | – | |
| Phobius | 431 | 455 | 25 | – | – | |
| TMHMM | 431 | 453 | 23 | – | – | |
| Phobius | 456 | 466 | 11 | – | – | |
| TMHMM | 466 | 485 | 20 | – | – | |
| Phobius | 467 | 486 | 20 | – | – | |
| Phobius | 487 | 491 | 5 | – | – | |
| Phobius | 492 | 511 | 20 | – | – | |
| TMHMM | 495 | 512 | 18 | – | – | |
| Phobius | 512 | 515 | 4 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0323379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0323379.1, powered by CORGI.
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