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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0326409 |
| Transcript ID | Lj0g3v0326409.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356533151|ref|XP_003535131.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 406 | 406 | 0 | – | |
| PANTHER | 1 | 406 | 406 | 0 | – | |
| MobiDBLite | 1 | 31 | 31 | – | – | |
| SMART | 202 | 395 | 194 | 6.80E-26 | ||
| Gene3D | 204 | 364 | 161 | 4.90E-44 | ||
| SUPERFAMILY | 210 | 395 | 186 | 8.72E-75 | ||
| Pfam | 212 | 366 | 155 | 1.20E-06 | ||
| ProSiteProfiles | 214 | 381 | 168 | 20.833 | ||
| CDD | 221 | 363 | 143 | 1.49E-24 | – | |
| PANTHER | 458 | 1028 | 571 | 0 | – | |
| PANTHER | 458 | 1028 | 571 | 0 | – | |
| SUPERFAMILY | 460 | 766 | 307 | 8.72E-75 | ||
| ProSiteProfiles | 468 | 642 | 175 | 14.433 | ||
| Pfam | 470 | 601 | 132 | 9.10E-13 | ||
| Gene3D | 470 | 610 | 141 | 1.90E-09 | ||
| CDD | 478 | 609 | 132 | 7.14E-07 | – | |
| SMART | 496 | 602 | 107 | 8.00E-11 | ||
| SMART | 664 | 754 | 91 | 6.90E-33 | ||
| Pfam | 665 | 753 | 89 | 5.40E-21 | ||
| Pfam | 792 | 902 | 111 | 1.70E-15 | ||
| SUPERFAMILY | 1004 | 1083 | 80 | 1.41E-11 | – | |
| Gene3D | 1007 | 1071 | 65 | 5.30E-11 | ||
| ProSiteProfiles | 1008 | 1073 | 66 | 8.591 | ||
| CDD | 1008 | 1071 | 64 | 2.43E-06 | – | |
| Pfam | 1009 | 1071 | 63 | 1.20E-08 | ||
| SMART | 1009 | 1072 | 64 | 0.0056 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0326409.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0326409.1, powered by CORGI.
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