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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0327789 |
| Transcript ID | Lj0g3v0327789.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DIS3-like exonuclease 2-like [Glycine max] gi|356550838|ref|XP_003543790.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 54 | 54 | – | – | |
| Hamap | 2 | 1055 | 1054 | 20.718 | ||
| PANTHER | 44 | 236 | 193 | 0 | – | |
| PANTHER | 44 | 236 | 193 | 0 | – | |
| SUPERFAMILY | 127 | 217 | 91 | 3.60E-27 | ||
| MobiDBLite | 243 | 277 | 35 | – | – | |
| SUPERFAMILY | 323 | 351 | 29 | 3.60E-27 | ||
| PANTHER | 337 | 842 | 506 | 0 | – | |
| PANTHER | 337 | 842 | 506 | 0 | – | |
| SUPERFAMILY | 342 | 466 | 125 | 1.03E-11 | ||
| SUPERFAMILY | 456 | 845 | 390 | 4.06E-119 | ||
| SMART | 494 | 844 | 351 | 2.10E-128 | – | |
| Pfam | 494 | 842 | 349 | 2.60E-99 | – | |
| ProSitePatterns | 811 | 835 | 25 | – | ||
| PANTHER | 881 | 1076 | 196 | 0 | – | |
| PANTHER | 881 | 1076 | 196 | 0 | – | |
| SUPERFAMILY | 891 | 934 | 44 | 4.06E-119 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 3'-5'-exoribonuclease activity | Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction. |
Expression pattern of Lj0g3v0327789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0327789.1, powered by CORGI.
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