Domain Predictions — View

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IPR022966

Source: InterPro

Description

IPR022966 is a Ribonuclease II/R, conserved site.

<p>This entry represents a conserved site for the ribonuclease II family. Proteins with this signature include characterised and related sequences to exoribonuclease II (RNase II) [[cite:PUB00045119]] and ribonuclease R, a bacterial 3' --> 5' exoribonuclease homologous to RNase II [[cite:PUB00015537], [cite:PUB00017190], [cite:PUB00017191]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0320789.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex exonuclease RRP44-like [Cicer arietinum] gi\|502153779\|ref\|XP_004509459.1\|	Domains IPR012340 IPR022966 IPR033770 PF00773 PF17215 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249	10
Lj0g3v0327789.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DIS3-like exonuclease 2-like [Glycine max] gi\|356550838\|ref\|XP_003543790.1\|	Domains IPR012340 IPR022966 IPR028591 MF_03045 PF00773 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	11
Lj0g3v0327789.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DIS3-like exonuclease 2-like [Glycine max] gi\|356550838\|ref\|XP_003543790.1\|	Domains IPR012340 IPR022966 IPR028591 MF_03045 PF00773 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	11
LotjaGi1g1v0154400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT1G77680.1 Ribonuclease II/R family protein; Swiss-Prot: sp\|P0DM58\|DI3L2_ARATH DIS3-like exonuclease 2; TrEMBL-Plants: tr\|A0A0R0GK53\|A0A0R0GK53_SOYBN DIS3-like exonuclease 2; Found in the gene: LotjaGi1g1v0154400	Domains G3DSA:2.40.50.690 G3DSA:2.40.50.700 IPR001900 IPR012340 IPR022966 IPR028591 IPR041505 MF_03045 PF00773 PF17849 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	16
LotjaGi4g1v0138200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	25
LotjaGi4g1v0138200.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|V7AVD4\|V7AVD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 IPR001900 IPR012340 IPR022966 IPR033770 IPR033771 IPR041505 PF00773 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11