Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF00773

Source: Pfam

Description

RNB domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676
GO:0004540 View details of GO:0004540 AmiGO InterPro QuickGO	Molecular function	Ribonuclease activity	Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.	Subterm of GO:0004518 GO:0140098

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0101069.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex exonuclease RRP44-like [Cicer arietinum] gi\|502153779\|ref\|XP_004509459.1\|	Domains IPR012340 IPR033771 PF00773 PF17216 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 mobidb-lite	9
Lj0g3v0189609.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like [Cicer arietinum] gi\|502146738\|ref\|XP_004506585.1\|	Domains IPR012340 PF00773 PTHR23355 PTHR23355:SF5 SM00955 SSF50249	6
Lj0g3v0320789.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex exonuclease RRP44-like [Cicer arietinum] gi\|502153779\|ref\|XP_004509459.1\|	Domains IPR012340 IPR022966 IPR033770 PF00773 PF17215 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249	10
Lj0g3v0327789.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DIS3-like exonuclease 2-like [Glycine max] gi\|356550838\|ref\|XP_003543790.1\|	Domains IPR012340 IPR022966 IPR028591 MF_03045 PF00773 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	11
Lj0g3v0327789.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DIS3-like exonuclease 2-like [Glycine max] gi\|356550838\|ref\|XP_003543790.1\|	Domains IPR012340 IPR022966 IPR028591 MF_03045 PF00773 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	11
LotjaGi1g1v0154400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT1G77680.1 Ribonuclease II/R family protein; Swiss-Prot: sp\|P0DM58\|DI3L2_ARATH DIS3-like exonuclease 2; TrEMBL-Plants: tr\|A0A0R0GK53\|A0A0R0GK53_SOYBN DIS3-like exonuclease 2; Found in the gene: LotjaGi1g1v0154400	Domains G3DSA:2.40.50.690 G3DSA:2.40.50.700 IPR001900 IPR012340 IPR022966 IPR028591 IPR041505 MF_03045 PF00773 PF17849 PS01175 PTHR23355 PTHR23355:SF9 SM00955 SSF50249 mobidb-lite	16
LotjaGi3g1v0225700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT5G02250.1 Ribonuclease II/R family protein; Swiss-Prot: sp\|Q6NQJ6\|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7MSB1\|K7MSB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0225700	Domains Coil IPR001900 IPR012340 PF00773 PTHR23355 PTHR23355:SF42 SM00955 SSF50249	8
LotjaGi3g1v0225700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT5G02250.1 Ribonuclease II/R family protein; Swiss-Prot: sp\|Q6NQJ6\|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7MSB1\|K7MSB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0225700	Domains Coil IPR001900 IPR012340 PF00773 PTHR23355 PTHR23355:SF42 SM00955 SSF50249	8
LotjaGi4g1v0138200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	24
LotjaGi4g1v0138200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00670 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	26
LotjaGi4g1v0138200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|A0A0B2R0N8\|A0A0B2R0N8_GLYSO Exosome complex exonuclease RRP44; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 G3DSA:3.40.50.1010 IPR001900 IPR002716 IPR012340 IPR022966 IPR029060 IPR033770 IPR033771 IPR041505 PF00773 PF13638 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 SSF88723 cd09862 mobidb-lite	25
LotjaGi4g1v0138200.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DIS3-like exonuclease 2; TAIR: AT2G17510.1 ribonuclease II family protein; Swiss-Prot: sp\|Q9SHL7\|RP44A_ARATH Exosome complex exonuclease RRP44 homolog A; TrEMBL-Plants: tr\|V7AVD4\|V7AVD4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0138200	Domains G3DSA:2.40.50.140 G3DSA:2.40.50.690 G3DSA:2.40.50.700 IPR001900 IPR012340 IPR022966 IPR033770 IPR033771 IPR041505 PF00773 PF17215 PF17216 PF17849 PS01175 PTHR23355 PTHR23355:SF35 SM00955 SSF50249 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14