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Lj0g3v0328799.1

Overview

Field Value
Gene ID Lj0g3v0328799
Transcript ID Lj0g3v0328799.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356558708|ref|XP_003547645.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd01049
1 187 187 5.80E-80
IPR033909
Phobius
NON_CYTOPLASMIC_DOMAIN
1 75 75 – –
Gene3D
G3DSA:1.10.620.20
2 159 158 7.20E-60
IPR012348
Pfam
PF00268
2 153 152 6.00E-61
IPR000358
PANTHER
PTHR23409
5 227 223 1.60E-144
IPR000358
SUPERFAMILY
SSF47240
5 202 198 3.16E-72
IPR009078
PANTHER
PTHR23409:SF24
5 227 223 1.60E-144 –
ProSitePatterns
PS00368
19 35 17 –
IPR030475
TMHMM
TMhelix
75 97 23 – –
Phobius
TRANSMEMBRANE
76 97 22 – –
Phobius
CYTOPLASMIC_DOMAIN
98 227 130 – –
Gene3D
G3DSA:1.10.620.20
160 186 27 4.40E-08
IPR012348

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009263
Biological process Deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0328799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0328799.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.