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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0329999 |
| Transcript ID | Lj0g3v0329999.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: rhomboid protease GluP-like [Solanum lycopersicum] gi|460373127|ref|XP_004232374.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 309 | 309 | – | – | |
| PANTHER | 88 | 548 | 461 | 4.90E-116 | ||
| PANTHER | 88 | 548 | 461 | 4.90E-116 | – | |
| Phobius | 310 | 328 | 19 | – | – | |
| SUPERFAMILY | 312 | 497 | 186 | 3.14E-32 | – | |
| Gene3D | 315 | 495 | 181 | 9.20E-32 | ||
| Phobius | 329 | 339 | 11 | – | – | |
| Phobius | 340 | 360 | 21 | – | – | |
| Pfam | 357 | 495 | 139 | 2.80E-29 | ||
| Phobius | 361 | 365 | 5 | – | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 366 | 383 | 18 | – | – | |
| Phobius | 384 | 394 | 11 | – | – | |
| TMHMM | 392 | 411 | 20 | – | – | |
| Phobius | 395 | 415 | 21 | – | – | |
| Phobius | 416 | 420 | 5 | – | – | |
| Phobius | 421 | 438 | 18 | – | – | |
| TMHMM | 421 | 438 | 18 | – | – | |
| Phobius | 439 | 457 | 19 | – | – | |
| Phobius | 458 | 474 | 17 | – | – | |
| Phobius | 475 | 479 | 5 | – | – | |
| Phobius | 480 | 499 | 20 | – | – | |
| Phobius | 500 | 519 | 20 | – | – | |
| Phobius | 520 | 541 | 22 | – | – | |
| TMHMM | 524 | 541 | 18 | – | – | |
| Phobius | 542 | 553 | 12 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0329999.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0329999.2, powered by CORGI.
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