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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0332049 |
| Transcript ID | Lj0g3v0332049.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Rhomboid family protein (ISS) [Medicago truncatula] gi|357436521|ref|XP_003588536.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 92 | 92 | – | – | |
| PANTHER | 11 | 158 | 148 | 2.30E-43 | ||
| PANTHER | 11 | 158 | 148 | 2.30E-43 | – | |
| Phobius | 93 | 111 | 19 | – | – | |
| SUPERFAMILY | 93 | 159 | 67 | 1.57E-11 | – | |
| TMHMM | 94 | 116 | 23 | – | – | |
| Gene3D | 95 | 158 | 64 | 4.40E-09 | ||
| Phobius | 112 | 147 | 36 | – | – | |
| Pfam | 125 | 158 | 34 | 1.70E-06 | ||
| TMHMM | 148 | 165 | 18 | – | – | |
| Phobius | 148 | 165 | 18 | – | – | |
| Phobius | 166 | 188 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj0g3v0332049.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0332049.1, powered by CORGI.
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