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Lj0g3v0332289.1

Overview

Field Value
Gene ID Lj0g3v0332289
Transcript ID Lj0g3v0332289.1
Lotus japonicus genome version MG20 v3.0
Description Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Theobroma cacao] gi|508715239|gb|EOY07136.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR18968:SF137
22 606 585 0 –
PANTHER
PTHR18968
22 606 585 0 –
PIRSF
PIRSF036565
40 601 562 6.70E-211
IPR012110
Gene3D
G3DSA:3.40.50.970
43 225 183 3.70E-78
IPR029061
Pfam
PF02776
45 212 168 4.80E-35
IPR012001
SUPERFAMILY
SSF52518
45 223 179 1.73E-43
IPR029061
CDD
cd07038
48 209 162 2.33E-88 –
SUPERFAMILY
SSF52467
231 385 155 1.24E-34
IPR029035
Gene3D
G3DSA:3.40.50.1220
233 392 160 3.50E-56
IPR029035
Pfam
PF00205
242 359 118 3.70E-21
IPR012000
Gene3D
G3DSA:3.40.50.970
401 592 192 1.00E-52
IPR029061
CDD
cd02005
407 589 183 4.50E-87 –
SUPERFAMILY
SSF52518
407 595 189 2.66E-41
IPR029061
Pfam
PF02775
452 577 126 1.60E-14
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0332289.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0332289.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.