Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0352249.1

Overview

Field Value
Gene ID Lj0g3v0352249
Transcript ID Lj0g3v0352249.1
Lotus japonicus genome version MG20 v3.0
Description Replication factor C large subunit [Medicago truncatula] gi|357438631|ref|XP_003589591.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12172:SF1
1 75 75 2.30E-295 –
PANTHER
PTHR12172
1 75 75 2.30E-295
IPR004582
SUPERFAMILY
SSF52540
16 52 37 1.06E-23
IPR027417
Gene3D
G3DSA:3.40.50.300
16 158 143 2.70E-20
IPR027417
SUPERFAMILY
SSF52540
79 159 81 1.06E-23
IPR027417
CDD
cd00009
80 161 82 1.18E-06 –
PANTHER
PTHR12172:SF1
92 143 52 2.30E-295 –
PANTHER
PTHR12172
92 143 52 2.30E-295
IPR004582
PANTHER
PTHR12172
179 319 141 2.30E-295
IPR004582
PANTHER
PTHR12172:SF1
179 319 141 2.30E-295 –
Gene3D
G3DSA:3.40.50.300
217 254 38 2.70E-20
IPR027417
SUPERFAMILY
SSF52540
218 331 114 1.06E-23
IPR027417
Gene3D
G3DSA:1.10.8.60
283 337 55 5.00E-08 –
PANTHER
PTHR12172:SF1
348 449 102 2.30E-295 –
PANTHER
PTHR12172
348 449 102 2.30E-295
IPR004582
PANTHER
PTHR12172
479 712 234 2.30E-295
IPR004582
PANTHER
PTHR12172:SF1
479 712 234 2.30E-295 –
PANTHER
PTHR12172
739 891 153 2.30E-295
IPR004582
PANTHER
PTHR12172:SF1
739 891 153 2.30E-295 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0352249.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0352249.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.