Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0354659.1

Overview

Field Value
Gene ID Lj0g3v0354659
Transcript ID Lj0g3v0354659.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00973
1 286 286 1.50E-86
IPR004179
Pfam
PF02889
2 284 283 3.60E-70
IPR004179
SUPERFAMILY
SSF158702
6 181 176 1.07E-40 –
Gene3D
G3DSA:1.10.3380.10
6 122 117 1.10E-29 –
Coils
Coil
139 159 21 – –
SUPERFAMILY
SSF52540
212 510 299 4.62E-49
IPR027417
Gene3D
G3DSA:2.60.40.150
217 287 71 1.90E-06
IPR000008
Gene3D
G3DSA:3.40.50.300
322 524 203 3.00E-39
IPR027417
PANTHER
PTHR24031
322 492 171 3.00E-12 –
PANTHER
PTHR24031:SF336
322 492 171 3.00E-12 –
SMART
SM00487
322 526 205 1.10E-29
IPR014001
Pfam
PF00270
328 492 165 4.20E-21
IPR011545
ProSiteProfiles
PS51192
335 510 176 19.544
IPR014001
CDD
cd00046
342 489 148 1.02E-17 –
SUPERFAMILY
SSF52540
512 721 210 5.19E-50
IPR027417
PANTHER
PTHR24031:SF336
518 578 61 3.00E-12 –
PANTHER
PTHR24031
518 578 61 3.00E-12 –
ProSiteProfiles
PS51194
541 750 210 11.37
IPR001650
Gene3D
G3DSA:3.40.50.300
544 714 171 1.50E-26
IPR027417
Pfam
PF00271
580 691 112 9.50E-09
IPR001650
SMART
SM00490
605 693 89 4.20E-19
IPR001650
CDD
cd00079
611 703 93 3.25E-15 –
PANTHER
PTHR24031
613 655 43 3.00E-12 –
PANTHER
PTHR24031:SF336
613 655 43 3.00E-12 –
SUPERFAMILY
SSF46785
722 821 100 4.08E-07
IPR011991
Pfam
PF02889
809 865 57 7.80E-17
IPR004179
Gene3D
G3DSA:1.10.3380.10
841 867 27 7.90E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0354659.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0354659.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.