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Lj0g3v0354659.2

Overview

Field Value
Gene ID Lj0g3v0354659
Transcript ID Lj0g3v0354659.2
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF02889
53 359 307 1.30E-83
IPR004179
SMART
SM00973
53 361 309 1.00E-110
IPR004179
Gene3D
G3DSA:1.10.3380.10
81 197 117 1.20E-29 –
SUPERFAMILY
SSF158702
81 256 176 1.23E-40 –
Coils
Coil
214 234 21 – –
SUPERFAMILY
SSF52540
287 585 299 5.90E-49
IPR027417
Gene3D
G3DSA:2.60.40.150
292 362 71 2.10E-06
IPR000008
Gene3D
G3DSA:3.40.50.300
397 599 203 3.40E-39
IPR027417
PANTHER
PTHR24031:SF336
397 567 171 3.00E-12 –
PANTHER
PTHR24031
397 567 171 3.00E-12 –
SMART
SM00487
397 601 205 1.10E-29
IPR014001
Pfam
PF00270
403 567 165 4.80E-21
IPR011545
ProSiteProfiles
PS51192
410 585 176 19.544
IPR014001
CDD
cd00046
417 564 148 8.82E-18 –
SUPERFAMILY
SSF52540
587 796 210 5.99E-50
IPR027417
PANTHER
PTHR24031
593 653 61 3.00E-12 –
PANTHER
PTHR24031:SF336
593 653 61 3.00E-12 –
ProSiteProfiles
PS51194
616 825 210 11.37
IPR001650
Gene3D
G3DSA:3.40.50.300
619 789 171 1.70E-26
IPR027417
Pfam
PF00271
655 766 112 1.10E-08
IPR001650
SMART
SM00490
680 768 89 4.20E-19
IPR001650
CDD
cd00079
686 778 93 3.13E-15 –
PANTHER
PTHR24031:SF336
688 730 43 3.00E-12 –
PANTHER
PTHR24031
688 730 43 3.00E-12 –
SUPERFAMILY
SSF46785
797 896 100 4.35E-07
IPR011991
Pfam
PF02889
884 940 57 8.60E-17
IPR004179
Gene3D
G3DSA:1.10.3380.10
916 942 27 8.60E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0354659.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0354659.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.