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Lj0g3v0364339.1

Overview

Field Value
Gene ID Lj0g3v0364339
Transcript ID Lj0g3v0364339.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cell division control protein 48 homolog C-like [Glycine max] gi|356525960|ref|XP_003531589.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF52540
152 434 283 1.26E-53
IPR027417
Gene3D
G3DSA:3.40.50.300
153 339 187 3.60E-54
IPR027417
PANTHER
PTHR23077
157 484 328 3.10E-178 –
PANTHER
PTHR23077:SF55
157 484 328 3.10E-178 –
CDD
cd00009
192 330 139 7.24E-24 –
SMART
SM00382
193 333 141 8.10E-20
IPR003593
Pfam
PF00004
197 330 134 2.10E-39
IPR003959
ProSitePatterns
PS00674
301 319 19 –
IPR003960
Gene3D
G3DSA:1.10.8.60
340 430 91 8.20E-19 –
Gene3D
G3DSA:3.40.50.300
431 474 44 2.30E-04
IPR027417
SUPERFAMILY
SSF52540
440 480 41 1.04E-31
IPR027417
SMART
SM00382
523 650 128 2.7
IPR003593
SUPERFAMILY
SSF52540
550 736 187 1.04E-31
IPR027417
Gene3D
G3DSA:3.40.50.300
561 663 103 1.90E-27
IPR027417
Pfam
PF00004
561 605 45 1.50E-07
IPR003959
PANTHER
PTHR23077
565 754 190 3.10E-178 –
CDD
cd00009
565 647 83 7.18E-08 –
PANTHER
PTHR23077:SF55
565 754 190 3.10E-178 –
Gene3D
G3DSA:1.10.8.60
664 730 67 1.50E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0364339.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0364339.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.