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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0050950 |
| Transcript ID | Lj1g3v0050950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max] gi|356540307|ref|XP_003538631.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 7 | 14 | 8 | – | – | |
| PANTHER | 14 | 61 | 48 | 0 | – | |
| PANTHER | 14 | 61 | 48 | 0 | – | |
| Phobius | 15 | 22 | 8 | – | – | |
| MobiDBLite | 22 | 62 | 41 | – | – | |
| Phobius | 23 | 782 | 760 | – | – | |
| PANTHER | 78 | 89 | 12 | 0 | – | |
| PANTHER | 78 | 89 | 12 | 0 | – | |
| ProSiteProfiles | 135 | 169 | 35 | 7.125 | ||
| Pfam | 158 | 219 | 62 | 1.40E-22 | ||
| ProSiteProfiles | 170 | 204 | 35 | 12.43 | ||
| Gene3D | 170 | 341 | 172 | 2.10E-09 | ||
| TIGRFAM | 172 | 205 | 34 | 4.40E-08 | ||
| PANTHER | 184 | 550 | 367 | 0 | – | |
| PANTHER | 184 | 550 | 367 | 0 | – | |
| ProSiteProfiles | 205 | 240 | 36 | 10.391 | ||
| TIGRFAM | 207 | 241 | 35 | 2.50E-04 | ||
| ProSiteProfiles | 241 | 275 | 35 | 12.408 | ||
| TIGRFAM | 243 | 276 | 34 | 2.00E-08 | ||
| Pfam | 264 | 323 | 60 | 2.50E-13 | ||
| ProSiteProfiles | 276 | 310 | 35 | 12.715 | ||
| TIGRFAM | 278 | 311 | 34 | 1.70E-07 | ||
| ProSiteProfiles | 311 | 345 | 35 | 11.696 | ||
| TIGRFAM | 313 | 347 | 35 | 2.10E-07 | ||
| Pfam | 333 | 395 | 63 | 5.60E-20 | ||
| ProSiteProfiles | 346 | 380 | 35 | 12.584 | ||
| TIGRFAM | 348 | 382 | 35 | 1.40E-07 | ||
| Gene3D | 379 | 470 | 92 | 2.10E-09 | ||
| ProSiteProfiles | 381 | 415 | 35 | 11.005 | ||
| TIGRFAM | 383 | 417 | 35 | 1.50E-07 | ||
| Pfam | 415 | 459 | 45 | 6.30E-10 | ||
| ProSiteProfiles | 416 | 450 | 35 | 12.2 | ||
| TIGRFAM | 418 | 451 | 34 | 2.10E-07 | ||
| ProSiteProfiles | 451 | 485 | 35 | 13.208 | ||
| TIGRFAM | 454 | 486 | 33 | 7.40E-09 | ||
| Gene3D | 471 | 481 | 11 | 7.60E-06 | ||
| Pfam | 485 | 533 | 49 | 5.40E-12 | ||
| ProSiteProfiles | 486 | 520 | 35 | 12.233 | ||
| TIGRFAM | 489 | 522 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 521 | 555 | 35 | 7.717 | ||
| ProSiteProfiles | 556 | 590 | 35 | 7.936 | ||
| Pfam | 582 | 637 | 56 | 7.80E-09 | ||
| PANTHER | 586 | 772 | 187 | 0 | – | |
| PANTHER | 586 | 772 | 187 | 0 | – | |
| Gene3D | 588 | 656 | 69 | 7.60E-06 | ||
| ProSiteProfiles | 591 | 625 | 35 | 10.611 | ||
| TIGRFAM | 594 | 626 | 33 | 4.10E-05 | ||
| ProSiteProfiles | 626 | 660 | 35 | 11.356 | ||
| TIGRFAM | 629 | 661 | 33 | 6.50E-06 | ||
| Pfam | 660 | 707 | 48 | 3.50E-15 | ||
| ProSiteProfiles | 661 | 695 | 35 | 13.548 | ||
| TIGRFAM | 663 | 697 | 35 | 9.80E-10 | ||
| ProSiteProfiles | 696 | 730 | 35 | 11.575 | ||
| TIGRFAM | 698 | 731 | 34 | 9.20E-08 | ||
| Pfam | 726 | 755 | 30 | 1.40E-07 | ||
| Gene3D | 728 | 759 | 32 | 7.60E-06 | ||
| ProSiteProfiles | 731 | 765 | 35 | 8.385 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0050950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0050950.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.